Hb_002232_370

Information

Type -
Description -
Location Contig2232: 290919-294504
Sequence    

Annotation

kegg
ID rcu:RCOM_1381360
description Receptor protein kinase CLAVATA1 precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_012074538.1
description PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
swissprot
ID Q9LJM4
description Receptor-like protein kinase HAIKU2 OS=Arabidopsis thaliana GN=IKU2 PE=1 SV=1
trembl
ID A0A067KUF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09887 PE=4 SV=1
Gene Ontology
ID GO:0005737
description receptor-like protein kinase haiku2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23131: 291008-294435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_370 0.0 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
2 Hb_000245_140 0.0667845991 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
3 Hb_000438_190 0.085133123 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_148914_010 0.0881725665 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_002965_020 0.0904431902 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
6 Hb_002232_400 0.0946936885 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
7 Hb_012796_050 0.0958365071 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
8 Hb_006006_070 0.1005024023 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_010407_120 0.100596648 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
10 Hb_001544_040 0.103716532 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
11 Hb_076895_020 0.1088423353 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
12 Hb_000648_120 0.1107522032 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
13 Hb_006538_050 0.1111688641 - - hypothetical protein RCOM_1308310 [Ricinus communis]
14 Hb_000758_030 0.1119594204 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
15 Hb_003786_060 0.1125445405 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
16 Hb_008406_010 0.1126094174 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
17 Hb_002048_010 0.1143489288 - - unknown [Lotus japonicus]
18 Hb_008225_080 0.1167975592 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
19 Hb_020332_040 0.118853712 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
20 Hb_000976_020 0.1197219267 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_370 Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_002232_370--Hb_000245_140 Hb_000438_190 Hb_000438_190 Hb_002232_370--Hb_000438_190 Hb_148914_010 Hb_148914_010 Hb_002232_370--Hb_148914_010 Hb_002965_020 Hb_002965_020 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_012796_050 Hb_012796_050 Hb_002232_370--Hb_012796_050 Hb_000245_140--Hb_002965_020 Hb_000245_140--Hb_148914_010 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_004544_070 Hb_004544_070 Hb_000438_190--Hb_004544_070 Hb_000438_190--Hb_148914_010 Hb_002749_070 Hb_002749_070 Hb_000438_190--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_000438_190--Hb_011145_020 Hb_010407_120 Hb_010407_120 Hb_000438_190--Hb_010407_120 Hb_148914_010--Hb_012796_050 Hb_148914_010--Hb_002965_020 Hb_148914_010--Hb_010407_120 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_002965_020--Hb_000976_020 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_006006_070 Hb_006006_070 Hb_002232_400--Hb_006006_070 Hb_000441_170 Hb_000441_170 Hb_002232_400--Hb_000441_170 Hb_076895_020 Hb_076895_020 Hb_002232_400--Hb_076895_020 Hb_002900_070 Hb_002900_070 Hb_002232_400--Hb_002900_070 Hb_002232_400--Hb_000438_190 Hb_012796_050--Hb_002048_010 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_033363_080 Hb_033363_080 Hb_012796_050--Hb_033363_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.38526 1.96161 3.23031 0.00574528 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130125 0.102401 0.0588608 30.8416 0.59095

CAGE analysis