Hb_002232_380

Information

Type -
Description -
Location Contig2232: 305495-309321
Sequence    

Annotation

kegg
ID rcu:RCOM_1381350
description malate dehydrogenase, putative (EC:1.1.1.37)
nr
ID XP_002522037.1
description malate dehydrogenase, putative [Ricinus communis]
swissprot
ID P46488
description Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1
trembl
ID B9S7S1
description Malate dehydrogenase OS=Ricinus communis GN=RCOM_1381350 PE=3 SV=1
Gene Ontology
ID GO:0005773
description malate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23132: 305730-309033 , PASA_asmbl_23133: 305565-305901
cDNA
(Sanger)
(ID:Location)		 005_L02r.ab1: 309318-310094

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_380 0.0 - - malate dehydrogenase, putative [Ricinus communis]
2 Hb_006829_080 0.0829746691 - - PREDICTED: protein LHCP TRANSLOCATION DEFECT [Jatropha curcas]
3 Hb_000802_050 0.0943312212 transcription factor TF Family: TCP PREDICTED: transcription factor TCP2-like [Jatropha curcas]
4 Hb_000703_070 0.0985388393 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
5 Hb_027298_020 0.1047047539 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
6 Hb_005618_080 0.1075534267 - - PREDICTED: protoporphyrinogen oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_003494_030 0.1090421943 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
8 Hb_031139_010 0.1094925816 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
9 Hb_005116_100 0.1119971211 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
10 Hb_000005_130 0.1134201687 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
11 Hb_011114_020 0.1148202436 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
12 Hb_001959_060 0.1157107392 - - PREDICTED: carboxyl-terminal-processing peptidase 2, chloroplastic [Jatropha curcas]
13 Hb_003549_140 0.1167897082 - - Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_001300_130 0.1173691522 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
15 Hb_002411_100 0.1176061797 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
16 Hb_000402_020 0.117718738 - - PREDICTED: 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_000684_430 0.1197958396 - - PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Jatropha curcas]
18 Hb_004117_040 0.1201154527 - - PREDICTED: uncharacterized protein LOC105638287 [Jatropha curcas]
19 Hb_000548_060 0.1205814169 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
20 Hb_000032_390 0.1215541279 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_380 Hb_002232_380 Hb_006829_080 Hb_006829_080 Hb_002232_380--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002232_380--Hb_000802_050 Hb_000703_070 Hb_000703_070 Hb_002232_380--Hb_000703_070 Hb_027298_020 Hb_027298_020 Hb_002232_380--Hb_027298_020 Hb_005618_080 Hb_005618_080 Hb_002232_380--Hb_005618_080 Hb_003494_030 Hb_003494_030 Hb_002232_380--Hb_003494_030 Hb_001959_060 Hb_001959_060 Hb_006829_080--Hb_001959_060 Hb_000473_050 Hb_000473_050 Hb_006829_080--Hb_000473_050 Hb_000684_430 Hb_000684_430 Hb_006829_080--Hb_000684_430 Hb_004055_160 Hb_004055_160 Hb_006829_080--Hb_004055_160 Hb_000005_130 Hb_000005_130 Hb_006829_080--Hb_000005_130 Hb_001300_130 Hb_001300_130 Hb_000802_050--Hb_001300_130 Hb_000802_050--Hb_006829_080 Hb_003549_140 Hb_003549_140 Hb_000802_050--Hb_003549_140 Hb_000802_050--Hb_000005_130 Hb_000802_050--Hb_000684_430 Hb_000703_070--Hb_027298_020 Hb_010557_010 Hb_010557_010 Hb_000703_070--Hb_010557_010 Hb_002411_100 Hb_002411_100 Hb_000703_070--Hb_002411_100 Hb_004117_150 Hb_004117_150 Hb_000703_070--Hb_004117_150 Hb_002811_250 Hb_002811_250 Hb_000703_070--Hb_002811_250 Hb_027298_020--Hb_001300_130 Hb_000803_170 Hb_000803_170 Hb_027298_020--Hb_000803_170 Hb_027298_020--Hb_010557_010 Hb_002811_310 Hb_002811_310 Hb_027298_020--Hb_002811_310 Hb_005618_080--Hb_001959_060 Hb_000402_020 Hb_000402_020 Hb_005618_080--Hb_000402_020 Hb_005116_100 Hb_005116_100 Hb_005618_080--Hb_005116_100 Hb_000056_310 Hb_000056_310 Hb_005618_080--Hb_000056_310 Hb_005618_080--Hb_006829_080 Hb_172632_060 Hb_172632_060 Hb_005618_080--Hb_172632_060 Hb_002304_180 Hb_002304_180 Hb_003494_030--Hb_002304_180 Hb_000032_390 Hb_000032_390 Hb_003494_030--Hb_000032_390 Hb_003494_030--Hb_006829_080 Hb_000193_220 Hb_000193_220 Hb_003494_030--Hb_000193_220 Hb_000667_140 Hb_000667_140 Hb_003494_030--Hb_000667_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2312 22.692 158.678 40.7013 19.2576 22.0514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1715 29.1799 7.57972 17.4054 226.147

CAGE analysis