Hb_002232_390

Information

Type -
Description -
Location Contig2232: 309389-311606
Sequence    

Annotation

kegg
ID tcc:TCM_006356
description Uncharacterized protein isoform 1
nr
ID XP_012074540.1
description PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KIH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09889 PE=4 SV=1
Gene Ontology
ID GO:0005783
description dna-directed rna polymerase subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23134: 309318-311576 , PASA_asmbl_23135: 309318-311552
cDNA
(Sanger)
(ID:Location)		 005_L02.ab1: 310094-311576 , 045_P11.ab1: 310155-311576

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_390 0.0 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
2 Hb_009178_060 0.0744423811 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000645_280 0.0807691525 - - PREDICTED: AMSH-like ubiquitin thioesterase 3 [Jatropha curcas]
4 Hb_003475_020 0.0877375562 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
5 Hb_000684_210 0.0904512309 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
6 Hb_007763_070 0.0911377938 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71460, chloroplastic [Jatropha curcas]
7 Hb_001449_070 0.0925080639 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000331_490 0.0971448371 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
9 Hb_005250_010 0.0973892255 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
10 Hb_000445_090 0.0984134432 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
11 Hb_003106_190 0.0998185547 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
12 Hb_001214_050 0.1005783555 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
13 Hb_001936_090 0.1016805041 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
14 Hb_029584_070 0.1018068225 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]
15 Hb_000613_110 0.1022774753 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
16 Hb_009020_040 0.1031449603 - - PREDICTED: triacylglycerol lipase 1 isoform X1 [Jatropha curcas]
17 Hb_028487_070 0.1037139993 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000261_050 0.1046394581 - - PREDICTED: probable magnesium transporter NIPA2 [Populus euphratica]
19 Hb_000359_210 0.1058415685 - - conserved hypothetical protein [Ricinus communis]
20 Hb_023988_030 0.1064950087 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]

Gene co-expression network

sample Hb_002232_390 Hb_002232_390 Hb_009178_060 Hb_009178_060 Hb_002232_390--Hb_009178_060 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_003475_020 Hb_003475_020 Hb_002232_390--Hb_003475_020 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_001449_070 Hb_001449_070 Hb_002232_390--Hb_001449_070 Hb_005511_150 Hb_005511_150 Hb_009178_060--Hb_005511_150 Hb_000803_320 Hb_000803_320 Hb_009178_060--Hb_000803_320 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010 Hb_028487_070 Hb_028487_070 Hb_000645_280--Hb_028487_070 Hb_000645_280--Hb_000684_210 Hb_001051_050 Hb_001051_050 Hb_000645_280--Hb_001051_050 Hb_001347_060 Hb_001347_060 Hb_000645_280--Hb_001347_060 Hb_005800_030 Hb_005800_030 Hb_000645_280--Hb_005800_030 Hb_003994_110 Hb_003994_110 Hb_003475_020--Hb_003994_110 Hb_001790_080 Hb_001790_080 Hb_003475_020--Hb_001790_080 Hb_000676_200 Hb_000676_200 Hb_003475_020--Hb_000676_200 Hb_000130_320 Hb_000130_320 Hb_003475_020--Hb_000130_320 Hb_002282_070 Hb_002282_070 Hb_003475_020--Hb_002282_070 Hb_000359_210 Hb_000359_210 Hb_000684_210--Hb_000359_210 Hb_170138_010 Hb_170138_010 Hb_000684_210--Hb_170138_010 Hb_001662_100 Hb_001662_100 Hb_000684_210--Hb_001662_100 Hb_003106_190 Hb_003106_190 Hb_000684_210--Hb_003106_190 Hb_009569_040 Hb_009569_040 Hb_000684_210--Hb_009569_040 Hb_001712_060 Hb_001712_060 Hb_007763_070--Hb_001712_060 Hb_006775_130 Hb_006775_130 Hb_007763_070--Hb_006775_130 Hb_000193_330 Hb_000193_330 Hb_007763_070--Hb_000193_330 Hb_000465_280 Hb_000465_280 Hb_007763_070--Hb_000465_280 Hb_001789_110 Hb_001789_110 Hb_007763_070--Hb_001789_110 Hb_000538_280 Hb_000538_280 Hb_007763_070--Hb_000538_280 Hb_000613_110 Hb_000613_110 Hb_001449_070--Hb_000613_110 Hb_007054_070 Hb_007054_070 Hb_001449_070--Hb_007054_070 Hb_000189_450 Hb_000189_450 Hb_001449_070--Hb_000189_450 Hb_000077_150 Hb_000077_150 Hb_001449_070--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_001449_070--Hb_001214_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7155 28.9489 31.0047 50.3161 30.3993 26.259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2089 30.4402 28.1531 24.397 95.802

CAGE analysis