Hb_002232_410

Information

Type -
Description -
Location Contig2232: 332991-337251
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08490g
description POPTRDRAFT_833135; L-galactose dehydrogenase family protein
nr
ID XP_012074544.1
description PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
swissprot
ID O81884
description L-galactose dehydrogenase OS=Arabidopsis thaliana GN=LGALDH PE=1 SV=1
trembl
ID A0A067KVN0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09891 PE=4 SV=1
Gene Ontology
ID GO:0005829
description l-galactose dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23137: 332983-337170 , PASA_asmbl_23138: 332983-337208
cDNA
(Sanger)
(ID:Location)		 021_O19.ab1: 332983-335117

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_410 0.0 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
2 Hb_008725_230 0.0474970083 - - PREDICTED: CTP synthase [Jatropha curcas]
3 Hb_000030_030 0.0559907668 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
4 Hb_002205_110 0.0570332741 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000732_010 0.0592011221 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
6 Hb_005271_220 0.0620331343 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_000028_370 0.0648912259 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
8 Hb_001359_050 0.0651777929 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000930_030 0.0672653761 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
10 Hb_008511_120 0.0673184458 - - NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis]
11 Hb_003761_010 0.0684494502 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_000331_550 0.0687372664 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
13 Hb_006570_080 0.06969772 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
14 Hb_000708_030 0.0719812464 - - PREDICTED: uncharacterized protein LOC105650742 [Jatropha curcas]
15 Hb_001205_240 0.0724298213 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
16 Hb_001252_120 0.0724461461 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
17 Hb_003376_330 0.0731067312 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
18 Hb_008013_050 0.073699565 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
19 Hb_000015_040 0.0753404396 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
20 Hb_002303_070 0.0755050843 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]

Gene co-expression network

sample Hb_002232_410 Hb_002232_410 Hb_008725_230 Hb_008725_230 Hb_002232_410--Hb_008725_230 Hb_000030_030 Hb_000030_030 Hb_002232_410--Hb_000030_030 Hb_002205_110 Hb_002205_110 Hb_002232_410--Hb_002205_110 Hb_000732_010 Hb_000732_010 Hb_002232_410--Hb_000732_010 Hb_005271_220 Hb_005271_220 Hb_002232_410--Hb_005271_220 Hb_000028_370 Hb_000028_370 Hb_002232_410--Hb_000028_370 Hb_001359_050 Hb_001359_050 Hb_008725_230--Hb_001359_050 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_008725_230--Hb_000028_370 Hb_005846_040 Hb_005846_040 Hb_000030_030--Hb_005846_040 Hb_001703_060 Hb_001703_060 Hb_000030_030--Hb_001703_060 Hb_003502_060 Hb_003502_060 Hb_000030_030--Hb_003502_060 Hb_003151_040 Hb_003151_040 Hb_000030_030--Hb_003151_040 Hb_168978_010 Hb_168978_010 Hb_000030_030--Hb_168978_010 Hb_002205_110--Hb_000028_370 Hb_002205_110--Hb_001205_240 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_010997_080 Hb_010997_080 Hb_002205_110--Hb_010997_080 Hb_000441_140 Hb_000441_140 Hb_002205_110--Hb_000441_140 Hb_065525_040 Hb_065525_040 Hb_000732_010--Hb_065525_040 Hb_000331_550 Hb_000331_550 Hb_000732_010--Hb_000331_550 Hb_000732_010--Hb_002205_110 Hb_000708_030 Hb_000708_030 Hb_000732_010--Hb_000708_030 Hb_000732_010--Hb_001205_240 Hb_005730_120 Hb_005730_120 Hb_005271_220--Hb_005730_120 Hb_002303_070 Hb_002303_070 Hb_005271_220--Hb_002303_070 Hb_032808_010 Hb_032808_010 Hb_005271_220--Hb_032808_010 Hb_008511_120 Hb_008511_120 Hb_005271_220--Hb_008511_120 Hb_000403_050 Hb_000403_050 Hb_005271_220--Hb_000403_050 Hb_000028_370--Hb_001205_240 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_000028_370--Hb_168978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.0933 33.9866 30.3917 33.6023 25.4591 30.6206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.3769 37.2085 32.7067 33.8052 22.4128

CAGE analysis