Hb_002232_440

Information

Type -
Description -
Location Contig2232: 354680-355801
Sequence    

Annotation

kegg
ID rcu:RCOM_0816830
description hypothetical protein
nr
ID XP_011030964.1
description PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067KIH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09894 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23142: 354628-355788
cDNA
(Sanger)
(ID:Location)		 039_D17.ab1: 354628-355758

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_440 0.0 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
2 Hb_002928_130 0.0646650223 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
3 Hb_007154_020 0.0763546143 - - -
4 Hb_001540_010 0.0802754922 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
5 Hb_001292_020 0.0825447458 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
6 Hb_010921_010 0.0843868273 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
7 Hb_000698_030 0.0844294621 - - PREDICTED: 60S ribosomal protein L8 [Jatropha curcas]
8 Hb_047503_010 0.0857987608 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
9 Hb_001832_060 0.0857996532 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
10 Hb_000608_370 0.0880294892 - - acyl-carrier-protein [Triadica sebifera]
11 Hb_028995_040 0.0882670334 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
12 Hb_000167_140 0.0896473397 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
13 Hb_000331_080 0.0897149787 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
14 Hb_000270_270 0.089924581 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
15 Hb_002686_020 0.0904533141 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
16 Hb_007416_030 0.0911564141 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
17 Hb_004657_050 0.091352479 - - PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Jatropha curcas]
18 Hb_001934_030 0.0931584496 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
19 Hb_005993_040 0.0937178936 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
20 Hb_001512_060 0.0937759091 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002232_440 Hb_002232_440 Hb_002928_130 Hb_002928_130 Hb_002232_440--Hb_002928_130 Hb_007154_020 Hb_007154_020 Hb_002232_440--Hb_007154_020 Hb_001540_010 Hb_001540_010 Hb_002232_440--Hb_001540_010 Hb_001292_020 Hb_001292_020 Hb_002232_440--Hb_001292_020 Hb_010921_010 Hb_010921_010 Hb_002232_440--Hb_010921_010 Hb_000698_030 Hb_000698_030 Hb_002232_440--Hb_000698_030 Hb_005993_040 Hb_005993_040 Hb_002928_130--Hb_005993_040 Hb_000015_080 Hb_000015_080 Hb_002928_130--Hb_000015_080 Hb_000392_440 Hb_000392_440 Hb_002928_130--Hb_000392_440 Hb_002346_020 Hb_002346_020 Hb_002928_130--Hb_002346_020 Hb_000331_080 Hb_000331_080 Hb_002928_130--Hb_000331_080 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_007154_020--Hb_010921_010 Hb_003050_080 Hb_003050_080 Hb_001540_010--Hb_003050_080 Hb_002686_020 Hb_002686_020 Hb_001540_010--Hb_002686_020 Hb_008878_030 Hb_008878_030 Hb_001540_010--Hb_008878_030 Hb_004931_090 Hb_004931_090 Hb_001540_010--Hb_004931_090 Hb_001540_010--Hb_005993_040 Hb_000970_010 Hb_000970_010 Hb_001540_010--Hb_000970_010 Hb_026549_040 Hb_026549_040 Hb_001292_020--Hb_026549_040 Hb_002942_190 Hb_002942_190 Hb_001292_020--Hb_002942_190 Hb_001292_020--Hb_002686_020 Hb_004048_110 Hb_004048_110 Hb_001292_020--Hb_004048_110 Hb_001292_020--Hb_008878_030 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_010921_010--Hb_005993_040 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_001832_060 Hb_001832_060 Hb_000698_030--Hb_001832_060 Hb_001235_190 Hb_001235_190 Hb_000698_030--Hb_001235_190 Hb_000866_270 Hb_000866_270 Hb_000698_030--Hb_000866_270 Hb_028995_040 Hb_028995_040 Hb_000698_030--Hb_028995_040 Hb_000462_130 Hb_000462_130 Hb_000698_030--Hb_000462_130 Hb_001269_630 Hb_001269_630 Hb_000698_030--Hb_001269_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
89.3634 39.9178 58.8064 18.0074 75.7621 52.5063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
94.099 141.069 83.0481 44.0741 29.6563

CAGE analysis