Hb_002232_450

Information

Type -
Description -
Location Contig2232: 356419-356856
Sequence    

Annotation

kegg
ID rcu:RCOM_1481420
description ATP binding protein, putative
nr
ID XP_012088627.1
description PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
swissprot
ID O22285
description Probable methyltransferase PMT11 OS=Arabidopsis thaliana GN=At2g39750 PE=2 SV=1
trembl
ID A0A067LJP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01390 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23142: 354628-355788
cDNA
(Sanger)
(ID:Location)		 039_D17.ab1: 354628-355758

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_450 0.0 - - PREDICTED: probable methyltransferase PMT11 [Jatropha curcas]
2 Hb_002028_100 0.2064400373 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
3 Hb_002733_030 0.2102626846 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
4 Hb_000012_300 0.2131729189 - - -
5 Hb_025457_010 0.2486933372 - - -
6 Hb_015707_010 0.2733401577 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
7 Hb_097968_010 0.2857093145 - - hypothetical protein PRUPE_ppa001143mg [Prunus persica]
8 Hb_002890_230 0.2952812356 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
9 Hb_000103_360 0.297181415 - - -
10 Hb_005656_060 0.2982055225 - - -
11 Hb_002686_380 0.3051616538 - - -
12 Hb_030291_020 0.3082848782 - - PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
13 Hb_000189_230 0.312031782 - - Auxin-induced protein [Aegilops tauschii]
14 Hb_001965_010 0.3131656674 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
15 Hb_010317_020 0.3132365369 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
16 Hb_178607_010 0.3133102112 - - PREDICTED: uncharacterized protein LOC105789535 [Gossypium raimondii]
17 Hb_001678_020 0.3174507496 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
18 Hb_067188_010 0.3185770991 - - -
19 Hb_006344_010 0.3198949502 - - -
20 Hb_001506_010 0.320627582 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]

Gene co-expression network

sample Hb_002232_450 Hb_002232_450 Hb_002028_100 Hb_002028_100 Hb_002232_450--Hb_002028_100 Hb_002733_030 Hb_002733_030 Hb_002232_450--Hb_002733_030 Hb_000012_300 Hb_000012_300 Hb_002232_450--Hb_000012_300 Hb_025457_010 Hb_025457_010 Hb_002232_450--Hb_025457_010 Hb_015707_010 Hb_015707_010 Hb_002232_450--Hb_015707_010 Hb_097968_010 Hb_097968_010 Hb_002232_450--Hb_097968_010 Hb_002028_100--Hb_002733_030 Hb_002028_100--Hb_015707_010 Hb_002028_100--Hb_097968_010 Hb_000590_040 Hb_000590_040 Hb_002028_100--Hb_000590_040 Hb_002028_100--Hb_025457_010 Hb_002733_030--Hb_025457_010 Hb_003881_050 Hb_003881_050 Hb_002733_030--Hb_003881_050 Hb_001965_010 Hb_001965_010 Hb_002733_030--Hb_001965_010 Hb_002686_380 Hb_002686_380 Hb_002733_030--Hb_002686_380 Hb_001775_040 Hb_001775_040 Hb_000012_300--Hb_001775_040 Hb_001767_020 Hb_001767_020 Hb_000012_300--Hb_001767_020 Hb_002890_230 Hb_002890_230 Hb_000012_300--Hb_002890_230 Hb_001241_040 Hb_001241_040 Hb_000012_300--Hb_001241_040 Hb_041774_010 Hb_041774_010 Hb_000012_300--Hb_041774_010 Hb_009421_010 Hb_009421_010 Hb_025457_010--Hb_009421_010 Hb_025457_010--Hb_097968_010 Hb_025457_010--Hb_002686_380 Hb_008370_010 Hb_008370_010 Hb_025457_010--Hb_008370_010 Hb_015707_010--Hb_097968_010 Hb_015707_010--Hb_003881_050 Hb_038011_010 Hb_038011_010 Hb_015707_010--Hb_038011_010 Hb_099864_010 Hb_099864_010 Hb_015707_010--Hb_099864_010 Hb_090497_010 Hb_090497_010 Hb_015707_010--Hb_090497_010 Hb_004103_030 Hb_004103_030 Hb_097968_010--Hb_004103_030 Hb_024505_050 Hb_024505_050 Hb_097968_010--Hb_024505_050 Hb_097968_010--Hb_009421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0714129 0 0 0 0.134546 0.337189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.217286 0.167496 0

CAGE analysis