Hb_002232_490

Information

Type -
Description -
Location Contig2232: 374678-383641
Sequence    

Annotation

kegg
ID rcu:RCOM_0816790
description transporter, putative
nr
ID XP_012074549.1
description PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9FLG8
description Probable sphingolipid transporter spinster homolog 2 OS=Arabidopsis thaliana GN=At5g64500 PE=2 SV=1
trembl
ID A0A067KUG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09897 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable sphingolipid transporter spinster homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23151: 374740-383623
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_490 0.0 - - PREDICTED: probable sphingolipid transporter spinster homolog 2 isoform X1 [Jatropha curcas]
2 Hb_003490_050 0.0724703333 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
3 Hb_002392_020 0.0904032542 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_001226_130 0.0918785265 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
5 Hb_024570_040 0.0942092724 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
6 Hb_000109_260 0.0957467514 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
7 Hb_003490_060 0.0976696322 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
8 Hb_000922_260 0.0985376083 - - PREDICTED: pantothenate kinase 2 [Jatropha curcas]
9 Hb_000009_030 0.1031886349 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
10 Hb_001587_030 0.1037565497 - - hypothetical protein JCGZ_09892 [Jatropha curcas]
11 Hb_005854_040 0.1038017876 - - conserved hypothetical protein [Ricinus communis]
12 Hb_014497_060 0.1076396276 - - phosphofructokinase, putative [Ricinus communis]
13 Hb_000976_110 0.1086327117 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
14 Hb_106890_010 0.1093830953 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
15 Hb_000768_160 0.1097558137 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
16 Hb_000984_140 0.1114120382 - - PREDICTED: xylulose kinase [Jatropha curcas]
17 Hb_000649_060 0.1117684511 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
18 Hb_000849_080 0.1153991161 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
19 Hb_002639_030 0.1158067289 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
20 Hb_055062_040 0.1160624014 - - ceramidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002232_490 Hb_002232_490 Hb_003490_050 Hb_003490_050 Hb_002232_490--Hb_003490_050 Hb_002392_020 Hb_002392_020 Hb_002232_490--Hb_002392_020 Hb_001226_130 Hb_001226_130 Hb_002232_490--Hb_001226_130 Hb_024570_040 Hb_024570_040 Hb_002232_490--Hb_024570_040 Hb_000109_260 Hb_000109_260 Hb_002232_490--Hb_000109_260 Hb_003490_060 Hb_003490_060 Hb_002232_490--Hb_003490_060 Hb_000922_260 Hb_000922_260 Hb_003490_050--Hb_000922_260 Hb_003490_050--Hb_003490_060 Hb_003490_050--Hb_000109_260 Hb_005571_010 Hb_005571_010 Hb_003490_050--Hb_005571_010 Hb_001341_010 Hb_001341_010 Hb_003490_050--Hb_001341_010 Hb_002392_020--Hb_003490_060 Hb_000358_210 Hb_000358_210 Hb_002392_020--Hb_000358_210 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_007943_150 Hb_007943_150 Hb_002392_020--Hb_007943_150 Hb_002284_100 Hb_002284_100 Hb_002392_020--Hb_002284_100 Hb_001587_030 Hb_001587_030 Hb_001226_130--Hb_001587_030 Hb_000649_060 Hb_000649_060 Hb_001226_130--Hb_000649_060 Hb_001811_170 Hb_001811_170 Hb_001226_130--Hb_001811_170 Hb_000342_050 Hb_000342_050 Hb_001226_130--Hb_000342_050 Hb_004837_280 Hb_004837_280 Hb_001226_130--Hb_004837_280 Hb_000152_700 Hb_000152_700 Hb_001226_130--Hb_000152_700 Hb_024570_040--Hb_002284_100 Hb_000849_080 Hb_000849_080 Hb_024570_040--Hb_000849_080 Hb_024570_040--Hb_002392_020 Hb_024570_040--Hb_000358_210 Hb_009524_030 Hb_009524_030 Hb_024570_040--Hb_009524_030 Hb_000976_110 Hb_000976_110 Hb_000109_260--Hb_000976_110 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_011674_040 Hb_011674_040 Hb_000109_260--Hb_011674_040 Hb_000009_030 Hb_000009_030 Hb_000109_260--Hb_000009_030 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_003490_060--Hb_000976_110 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.33066 5.43219 8.91157 10.5485 5.26734 4.49847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37784 1.91371 2.71802 14.6698 15.042

CAGE analysis