Hb_002233_070

Information

Type -
Description -
Location Contig2233: 65191-66315
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI18300.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6GYB8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0075g00820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_003126_020 0.1372983255 - - Oligopeptide transporter, putative [Ricinus communis]
3 Hb_011689_100 0.1419830804 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
4 Hb_000117_060 0.1596432178 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
5 Hb_056012_010 0.1647729253 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
6 Hb_001662_170 0.1664161103 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
7 Hb_009476_150 0.1763420199 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
8 Hb_012258_020 0.1775281644 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_009040_010 0.1810814368 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
10 Hb_001277_040 0.1827788795 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
11 Hb_003637_020 0.1831254638 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004106_010 0.1832843401 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
13 Hb_003913_030 0.1833959577 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
14 Hb_012787_040 0.1862448903 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_005568_130 0.1876666192 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
16 Hb_002534_050 0.1883328247 transcription factor TF Family: C2C2-Dof hypothetical protein JCGZ_11638 [Jatropha curcas]
17 Hb_002368_030 0.188676634 transcription factor TF Family: GRAS PREDICTED: DELLA protein GAIP-B [Jatropha curcas]
18 Hb_158696_010 0.1906428743 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
19 Hb_017434_070 0.192135218 - - transcription factor, putative [Ricinus communis]
20 Hb_000610_060 0.1931621259 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]

Gene co-expression network

sample Hb_002233_070 Hb_002233_070 Hb_003126_020 Hb_003126_020 Hb_002233_070--Hb_003126_020 Hb_011689_100 Hb_011689_100 Hb_002233_070--Hb_011689_100 Hb_000117_060 Hb_000117_060 Hb_002233_070--Hb_000117_060 Hb_056012_010 Hb_056012_010 Hb_002233_070--Hb_056012_010 Hb_001662_170 Hb_001662_170 Hb_002233_070--Hb_001662_170 Hb_009476_150 Hb_009476_150 Hb_002233_070--Hb_009476_150 Hb_033642_070 Hb_033642_070 Hb_003126_020--Hb_033642_070 Hb_001053_200 Hb_001053_200 Hb_003126_020--Hb_001053_200 Hb_003126_020--Hb_001662_170 Hb_158696_010 Hb_158696_010 Hb_003126_020--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_003126_020--Hb_004106_010 Hb_002122_030 Hb_002122_030 Hb_011689_100--Hb_002122_030 Hb_012787_040 Hb_012787_040 Hb_011689_100--Hb_012787_040 Hb_011689_100--Hb_001053_200 Hb_000610_060 Hb_000610_060 Hb_011689_100--Hb_000610_060 Hb_000803_060 Hb_000803_060 Hb_011689_100--Hb_000803_060 Hb_006711_070 Hb_006711_070 Hb_000117_060--Hb_006711_070 Hb_003637_020 Hb_003637_020 Hb_000117_060--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_000117_060--Hb_185513_010 Hb_001437_010 Hb_001437_010 Hb_000117_060--Hb_001437_010 Hb_012258_020 Hb_012258_020 Hb_000117_060--Hb_012258_020 Hb_138585_100 Hb_138585_100 Hb_000117_060--Hb_138585_100 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_056012_010--Hb_185513_010 Hb_056012_010--Hb_001662_170 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_000438_150 Hb_000438_150 Hb_009476_150--Hb_000438_150 Hb_009476_150--Hb_012258_020 Hb_001357_280 Hb_001357_280 Hb_009476_150--Hb_001357_280 Hb_006286_010 Hb_006286_010 Hb_009476_150--Hb_006286_010 Hb_000732_240 Hb_000732_240 Hb_009476_150--Hb_000732_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.04361 7.15143 1.90171 2.96779 0.378239 0.633833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.272203 0.214031 0 0.75819 1.07342

CAGE analysis