Hb_002233_100

Information

Type -
Description -
Location Contig2233: 91790-93927
Sequence    

Annotation

kegg
ID mdm:103413173
description cleavage and polyadenylation specificity factor subunit 6-like
nr
ID XP_008349883.1
description PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
swissprot
ID Q9VSH4
description Cleavage and polyadenylation specificity factor subunit CG7185 OS=Drosophila melanogaster GN=CG7185 PE=1 SV=2
trembl
ID B9S9T2
description RNA-binding protein, putative OS=Ricinus communis GN=RCOM_0522060 PE=4 SV=1
Gene Ontology
ID GO:0097159
description cleavage and polyadenylation specificity factor subunit 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23156: 93810-95918 , PASA_asmbl_23157: 93810-94377 , PASA_asmbl_23158: 93861-95891
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_100 0.0 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]
2 Hb_000041_090 0.0828157143 - - PREDICTED: uncharacterized protein LOC105641452 [Jatropha curcas]
3 Hb_000046_190 0.0891201236 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
4 Hb_004108_100 0.0912076609 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
5 Hb_000853_210 0.0914574028 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
6 Hb_014267_010 0.0916090896 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
7 Hb_064903_010 0.0933617601 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
8 Hb_000796_040 0.0954971283 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000032_470 0.0974120604 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
10 Hb_000318_390 0.0976332489 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
11 Hb_128743_010 0.0983332998 - - RNA-binding protein, putative [Ricinus communis]
12 Hb_000960_100 0.098882706 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
13 Hb_000005_070 0.099419113 transcription factor TF Family: PHD protein binding protein, putative [Ricinus communis]
14 Hb_000031_170 0.0997836214 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
15 Hb_005488_150 0.1002447917 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_007416_160 0.10452705 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
17 Hb_002232_030 0.1047522951 - - Pinin, putative [Ricinus communis]
18 Hb_001967_030 0.1056259838 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
19 Hb_000069_320 0.1058140708 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
20 Hb_000406_020 0.1069843342 - - -

Gene co-expression network

sample Hb_002233_100 Hb_002233_100 Hb_000041_090 Hb_000041_090 Hb_002233_100--Hb_000041_090 Hb_000046_190 Hb_000046_190 Hb_002233_100--Hb_000046_190 Hb_004108_100 Hb_004108_100 Hb_002233_100--Hb_004108_100 Hb_000853_210 Hb_000853_210 Hb_002233_100--Hb_000853_210 Hb_014267_010 Hb_014267_010 Hb_002233_100--Hb_014267_010 Hb_064903_010 Hb_064903_010 Hb_002233_100--Hb_064903_010 Hb_006295_020 Hb_006295_020 Hb_000041_090--Hb_006295_020 Hb_006816_430 Hb_006816_430 Hb_000041_090--Hb_006816_430 Hb_000300_120 Hb_000300_120 Hb_000041_090--Hb_000300_120 Hb_003203_030 Hb_003203_030 Hb_000041_090--Hb_003203_030 Hb_003440_050 Hb_003440_050 Hb_000041_090--Hb_003440_050 Hb_002909_120 Hb_002909_120 Hb_000046_190--Hb_002909_120 Hb_009767_080 Hb_009767_080 Hb_000046_190--Hb_009767_080 Hb_003119_080 Hb_003119_080 Hb_000046_190--Hb_003119_080 Hb_019430_020 Hb_019430_020 Hb_000046_190--Hb_019430_020 Hb_005488_170 Hb_005488_170 Hb_000046_190--Hb_005488_170 Hb_005348_010 Hb_005348_010 Hb_000046_190--Hb_005348_010 Hb_000960_100 Hb_000960_100 Hb_004108_100--Hb_000960_100 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_000025_320 Hb_000025_320 Hb_004108_100--Hb_000025_320 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_000796_040 Hb_000796_040 Hb_000853_210--Hb_000796_040 Hb_000009_600 Hb_000009_600 Hb_000853_210--Hb_000009_600 Hb_034432_030 Hb_034432_030 Hb_000853_210--Hb_034432_030 Hb_004228_010 Hb_004228_010 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080 Hb_012656_030 Hb_012656_030 Hb_014267_010--Hb_012656_030 Hb_000318_390 Hb_000318_390 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_004228_010 Hb_010417_050 Hb_010417_050 Hb_014267_010--Hb_010417_050 Hb_000768_190 Hb_000768_190 Hb_064903_010--Hb_000768_190 Hb_111985_080 Hb_111985_080 Hb_064903_010--Hb_111985_080 Hb_002301_080 Hb_002301_080 Hb_064903_010--Hb_002301_080 Hb_003847_120 Hb_003847_120 Hb_064903_010--Hb_003847_120 Hb_000832_130 Hb_000832_130 Hb_064903_010--Hb_000832_130 Hb_003044_020 Hb_003044_020 Hb_064903_010--Hb_003044_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9013 19.0807 6.04855 7.42028 24.6978 16.167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.29069 5.77762 16.2704 10.0573 20.3917

CAGE analysis