Hb_002233_150

Information

Type -
Description -
Location Contig2233: 136984-140047
Sequence    

Annotation

kegg
ID rcu:RCOM_0522210
description hypothetical protein
nr
ID XP_012071016.1
description PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9S9T7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23160: 136984-140027 , PASA_asmbl_23162: 139446-139611
cDNA
(Sanger)
(ID:Location)		 050_C23.ab1: 137170-140027

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_150 0.0 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
2 Hb_011970_030 0.063598414 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
3 Hb_000661_250 0.065287728 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
4 Hb_002043_190 0.0660802827 - - rwd domain-containing protein, putative [Ricinus communis]
5 Hb_010661_030 0.0681706373 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
6 Hb_003292_040 0.0711860582 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
7 Hb_000933_180 0.0731121229 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
8 Hb_000000_160 0.0733440567 - - PREDICTED: membrin-11 [Jatropha curcas]
9 Hb_003752_080 0.0736467497 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
10 Hb_000640_240 0.0737483755 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
11 Hb_003363_110 0.0740716561 - - protein with unknown function [Ricinus communis]
12 Hb_001404_100 0.0740791624 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
13 Hb_001635_170 0.0743286985 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
14 Hb_000494_020 0.0755253375 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
15 Hb_003078_040 0.0756539636 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
16 Hb_007576_040 0.0772999359 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
17 Hb_001564_130 0.078306716 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_001348_070 0.0800641608 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_007154_020 0.0801939114 - - -
20 Hb_005993_040 0.0817326819 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]

Gene co-expression network

sample Hb_002233_150 Hb_002233_150 Hb_011970_030 Hb_011970_030 Hb_002233_150--Hb_011970_030 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_003292_040 Hb_003292_040 Hb_002233_150--Hb_003292_040 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180 Hb_011970_030--Hb_003292_040 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_001259_090 Hb_001259_090 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_001635_170 Hb_001635_170 Hb_000661_250--Hb_001635_170 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_005993_040 Hb_005993_040 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_002081_130 Hb_002081_130 Hb_002043_190--Hb_002081_130 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_003292_040--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_009767_120 Hb_009767_120 Hb_000933_180--Hb_009767_120 Hb_011360_140 Hb_011360_140 Hb_000933_180--Hb_011360_140 Hb_000107_050 Hb_000107_050 Hb_000933_180--Hb_000107_050 Hb_000494_020 Hb_000494_020 Hb_000933_180--Hb_000494_020 Hb_010128_130 Hb_010128_130 Hb_000933_180--Hb_010128_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.0634 31.1703 44.1348 28.4675 69.3271 62.0277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.6275 82.7783 36.1248 35.8559 13.5921

CAGE analysis