Hb_002234_070

Information

Type -
Description -
Location Contig2234: 61804-70812
Sequence    

Annotation

kegg
ID tcc:TCM_021578
description hypothetical protein
nr
ID XP_012089743.1
description PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00397 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23165: 61927-71110 , PASA_asmbl_23166: 70190-70363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_070 0.0 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
2 Hb_000684_270 0.0798984093 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
3 Hb_077354_010 0.0841280654 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
4 Hb_134949_020 0.0853556045 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
5 Hb_144598_020 0.088369302 - - PREDICTED: triphosphate tunel metalloenzyme 3 [Jatropha curcas]
6 Hb_003125_150 0.0897873618 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
7 Hb_000987_070 0.090480153 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
8 Hb_033594_110 0.0908935514 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
9 Hb_010175_040 0.0911085155 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
10 Hb_000201_120 0.0914679095 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
11 Hb_000111_330 0.0951786536 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
12 Hb_003581_150 0.0956621656 - - hypothetical protein CICLE_v10032366mg [Citrus clementina]
13 Hb_030736_080 0.097728041 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000996_140 0.0981828242 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
15 Hb_001882_070 0.0989747901 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
16 Hb_007441_330 0.0994501788 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
17 Hb_000103_320 0.1011911129 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_000317_070 0.1022502845 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
19 Hb_165132_010 0.1024832197 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
20 Hb_000027_150 0.1026202455 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002234_070 Hb_002234_070 Hb_000684_270 Hb_000684_270 Hb_002234_070--Hb_000684_270 Hb_077354_010 Hb_077354_010 Hb_002234_070--Hb_077354_010 Hb_134949_020 Hb_134949_020 Hb_002234_070--Hb_134949_020 Hb_144598_020 Hb_144598_020 Hb_002234_070--Hb_144598_020 Hb_003125_150 Hb_003125_150 Hb_002234_070--Hb_003125_150 Hb_000987_070 Hb_000987_070 Hb_002234_070--Hb_000987_070 Hb_000525_020 Hb_000525_020 Hb_000684_270--Hb_000525_020 Hb_008771_030 Hb_008771_030 Hb_000684_270--Hb_008771_030 Hb_000684_270--Hb_077354_010 Hb_004871_020 Hb_004871_020 Hb_000684_270--Hb_004871_020 Hb_029904_030 Hb_029904_030 Hb_000684_270--Hb_029904_030 Hb_033594_110 Hb_033594_110 Hb_077354_010--Hb_033594_110 Hb_003018_120 Hb_003018_120 Hb_077354_010--Hb_003018_120 Hb_000297_230 Hb_000297_230 Hb_077354_010--Hb_000297_230 Hb_006831_130 Hb_006831_130 Hb_077354_010--Hb_006831_130 Hb_165132_010 Hb_165132_010 Hb_134949_020--Hb_165132_010 Hb_001341_090 Hb_001341_090 Hb_134949_020--Hb_001341_090 Hb_134949_020--Hb_033594_110 Hb_000996_140 Hb_000996_140 Hb_134949_020--Hb_000996_140 Hb_002864_050 Hb_002864_050 Hb_134949_020--Hb_002864_050 Hb_001314_100 Hb_001314_100 Hb_134949_020--Hb_001314_100 Hb_001080_080 Hb_001080_080 Hb_144598_020--Hb_001080_080 Hb_007416_020 Hb_007416_020 Hb_144598_020--Hb_007416_020 Hb_002431_050 Hb_002431_050 Hb_144598_020--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_144598_020--Hb_010672_060 Hb_000029_200 Hb_000029_200 Hb_144598_020--Hb_000029_200 Hb_001269_270 Hb_001269_270 Hb_003125_150--Hb_001269_270 Hb_001045_080 Hb_001045_080 Hb_003125_150--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_003125_150--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_003125_150--Hb_009851_100 Hb_007479_020 Hb_007479_020 Hb_003125_150--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_003125_150--Hb_000120_750 Hb_001105_070 Hb_001105_070 Hb_000987_070--Hb_001105_070 Hb_065525_020 Hb_065525_020 Hb_000987_070--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_000987_070--Hb_002030_040 Hb_000705_210 Hb_000705_210 Hb_000987_070--Hb_000705_210 Hb_000201_120 Hb_000201_120 Hb_000987_070--Hb_000201_120 Hb_030736_080 Hb_030736_080 Hb_000987_070--Hb_030736_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.0251 5.86817 9.68327 13.4453 6.60188 9.3377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.5459 31.2651 16.4144 6.32992 4.30966

CAGE analysis