Hb_002234_090

Information

Type -
Description -
Location Contig2234: 86473-93458
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13680g
description hypothetical protein
nr
ID XP_012090306.1
description PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
swissprot
ID F4JT98
description Probable transcriptional regulator SLK3 OS=Arabidopsis thaliana GN=SLK3 PE=3 SV=1
trembl
ID A0A067JEL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26152 PE=4 SV=1
Gene Ontology
ID GO:0003677
description probable transcriptional regulator slk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23167: 86506-93445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_090 0.0 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
2 Hb_010712_050 0.0612408097 - - PREDICTED: protein ELC-like [Jatropha curcas]
3 Hb_002675_130 0.0613766944 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
4 Hb_004916_010 0.0618294767 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
5 Hb_003835_070 0.0630083833 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
6 Hb_003768_050 0.0634377979 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
7 Hb_003544_060 0.0634845461 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
8 Hb_022256_020 0.065938853 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
9 Hb_000347_400 0.0674304567 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
10 Hb_003906_200 0.0675576048 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
11 Hb_002217_170 0.068056264 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
12 Hb_001635_120 0.0680734044 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
13 Hb_000868_090 0.0685210941 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
14 Hb_002818_030 0.0692219912 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
15 Hb_010068_080 0.0695542651 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
16 Hb_004030_080 0.0698250183 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
17 Hb_000028_130 0.0701903162 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
18 Hb_005551_020 0.0709771294 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_003464_090 0.0713756723 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_001716_020 0.0735220688 - - hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002234_090 Hb_002234_090 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003768_050 Hb_003768_050 Hb_002234_090--Hb_003768_050 Hb_003544_060 Hb_003544_060 Hb_002234_090--Hb_003544_060 Hb_003030_060 Hb_003030_060 Hb_010712_050--Hb_003030_060 Hb_012194_030 Hb_012194_030 Hb_010712_050--Hb_012194_030 Hb_000329_370 Hb_000329_370 Hb_010712_050--Hb_000329_370 Hb_001614_060 Hb_001614_060 Hb_010712_050--Hb_001614_060 Hb_010712_050--Hb_003835_070 Hb_022256_020 Hb_022256_020 Hb_002675_130--Hb_022256_020 Hb_004787_050 Hb_004787_050 Hb_002675_130--Hb_004787_050 Hb_001998_240 Hb_001998_240 Hb_002675_130--Hb_001998_240 Hb_002675_130--Hb_004916_010 Hb_011618_070 Hb_011618_070 Hb_002675_130--Hb_011618_070 Hb_002818_030 Hb_002818_030 Hb_004916_010--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_004916_010--Hb_003849_110 Hb_000029_060 Hb_000029_060 Hb_004916_010--Hb_000029_060 Hb_000015_170 Hb_000015_170 Hb_004916_010--Hb_000015_170 Hb_001716_020 Hb_001716_020 Hb_004916_010--Hb_001716_020 Hb_002205_250 Hb_002205_250 Hb_003835_070--Hb_002205_250 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_000614_210 Hb_000614_210 Hb_003835_070--Hb_000614_210 Hb_105105_010 Hb_105105_010 Hb_003835_070--Hb_105105_010 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_003768_050--Hb_001614_060 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_003544_060--Hb_011618_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5506 29.6688 18.0129 17.2513 12.7796 16.228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3215 14.3167 21.9217 22.1854 19.5766

CAGE analysis