Hb_002234_100

Information

Type -
Description -
Location Contig2234: 94434-97753
Sequence    

Annotation

kegg
ID tcc:TCM_015100
description F-box family protein, putative isoform 1
nr
ID XP_007038601.1
description F-box family protein, putative isoform 1 [Theobroma cacao]
swissprot
ID Q8LG03
description F-box protein At4g00755 OS=Arabidopsis thaliana GN=At4g00755 PE=2 SV=1
trembl
ID A0A061G138
description F-box family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_015100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23169: 94434-97731 , PASA_asmbl_23170: 95046-95200 , PASA_asmbl_23171: 97431-97666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_100 0.0 - - F-box family protein, putative isoform 1 [Theobroma cacao]
2 Hb_000856_380 0.0599820089 - - ubiquitin-conjugating enzyme [Medicago truncatula]
3 Hb_012389_020 0.0993936658 - - hypothetical protein POPTR_0006s05190g [Populus trichocarpa]
4 Hb_004586_140 0.1020996937 - - PREDICTED: uncharacterized protein LOC105630689 [Jatropha curcas]
5 Hb_003125_200 0.1021449326 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]
6 Hb_003747_220 0.1023535476 - - PREDICTED: syntaxin-22-like isoform X2 [Jatropha curcas]
7 Hb_010560_020 0.102536589 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
8 Hb_000179_070 0.1025419905 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
9 Hb_000120_330 0.1030818485 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000220_040 0.1065672466 - - conserved hypothetical protein [Ricinus communis]
11 Hb_153553_030 0.1071322212 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
12 Hb_180424_010 0.1074014033 - - Charged multivesicular body protein, putative [Ricinus communis]
13 Hb_000367_160 0.1092162043 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
14 Hb_000009_530 0.110142911 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
15 Hb_000868_110 0.1107030014 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
16 Hb_001437_080 0.1123748278 transcription factor TF Family: TCP hypothetical protein JCGZ_05472 [Jatropha curcas]
17 Hb_000462_130 0.1133023211 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
18 Hb_095296_010 0.115011989 - - PREDICTED: syntaxin-32 [Jatropha curcas]
19 Hb_000679_090 0.1165364741 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
20 Hb_003020_270 0.1168631952 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]

Gene co-expression network

sample Hb_002234_100 Hb_002234_100 Hb_000856_380 Hb_000856_380 Hb_002234_100--Hb_000856_380 Hb_012389_020 Hb_012389_020 Hb_002234_100--Hb_012389_020 Hb_004586_140 Hb_004586_140 Hb_002234_100--Hb_004586_140 Hb_003125_200 Hb_003125_200 Hb_002234_100--Hb_003125_200 Hb_003747_220 Hb_003747_220 Hb_002234_100--Hb_003747_220 Hb_010560_020 Hb_010560_020 Hb_002234_100--Hb_010560_020 Hb_001437_150 Hb_001437_150 Hb_000856_380--Hb_001437_150 Hb_180424_010 Hb_180424_010 Hb_000856_380--Hb_180424_010 Hb_000868_110 Hb_000868_110 Hb_000856_380--Hb_000868_110 Hb_000367_160 Hb_000367_160 Hb_000856_380--Hb_000367_160 Hb_000856_380--Hb_010560_020 Hb_002192_080 Hb_002192_080 Hb_012389_020--Hb_002192_080 Hb_012389_020--Hb_004586_140 Hb_012389_020--Hb_003125_200 Hb_004931_070 Hb_004931_070 Hb_012389_020--Hb_004931_070 Hb_000302_270 Hb_000302_270 Hb_012389_020--Hb_000302_270 Hb_000853_430 Hb_000853_430 Hb_012389_020--Hb_000853_430 Hb_000179_070 Hb_000179_070 Hb_004586_140--Hb_000179_070 Hb_004586_140--Hb_000302_270 Hb_000061_470 Hb_000061_470 Hb_004586_140--Hb_000061_470 Hb_000308_030 Hb_000308_030 Hb_004586_140--Hb_000308_030 Hb_000521_320 Hb_000521_320 Hb_004586_140--Hb_000521_320 Hb_000465_460 Hb_000465_460 Hb_003125_200--Hb_000465_460 Hb_001758_100 Hb_001758_100 Hb_003125_200--Hb_001758_100 Hb_003125_200--Hb_004931_070 Hb_027472_040 Hb_027472_040 Hb_003125_200--Hb_027472_040 Hb_029388_020 Hb_029388_020 Hb_003125_200--Hb_029388_020 Hb_000252_150 Hb_000252_150 Hb_003747_220--Hb_000252_150 Hb_001143_130 Hb_001143_130 Hb_003747_220--Hb_001143_130 Hb_000635_180 Hb_000635_180 Hb_003747_220--Hb_000635_180 Hb_000462_130 Hb_000462_130 Hb_003747_220--Hb_000462_130 Hb_003747_220--Hb_000179_070 Hb_003747_220--Hb_004586_140 Hb_004453_170 Hb_004453_170 Hb_010560_020--Hb_004453_170 Hb_010560_020--Hb_000367_160 Hb_000915_090 Hb_000915_090 Hb_010560_020--Hb_000915_090 Hb_000155_200 Hb_000155_200 Hb_010560_020--Hb_000155_200 Hb_010560_020--Hb_000462_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.3365 58.9668 52.7892 25.2547 34.867 42.4588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8804 80.2623 43.9919 16.2801 11.7672

CAGE analysis