Hb_002234_150

Information

Type -
Description -
Location Contig2234: 113907-117459
Sequence    

Annotation

kegg
ID rcu:RCOM_1574420
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative (EC:1.14.13.71)
nr
ID XP_002513347.1
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
swissprot
ID O64899
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme 1 (Fragment) OS=Eschscholzia californica GN=CYP80B1 PE=2 SV=1
trembl
ID B9RHX8
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative OS=Ricinus communis GN=RCOM_1574420 PE=3 SV=1
Gene Ontology
ID GO:0004497
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23178: 116502-116820
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_150 0.0 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
2 Hb_001080_310 0.0790851713 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
3 Hb_002311_050 0.090261131 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
4 Hb_041769_010 0.1027286621 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
5 Hb_000365_300 0.1041707794 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
6 Hb_005731_080 0.1070968577 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_000251_100 0.1099097684 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_002422_040 0.1099999523 - - hypothetical protein POPTR_0016s02350g [Populus trichocarpa]
9 Hb_000101_050 0.1111908935 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
10 Hb_000813_120 0.111329134 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
11 Hb_004195_040 0.1164314935 - - salicylic acid methyl transferase [Capsicum annuum]
12 Hb_001047_250 0.1165601235 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
13 Hb_000522_040 0.1179198788 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
14 Hb_004185_040 0.1184161339 - - polygalacturonase, putative [Ricinus communis]
15 Hb_012019_030 0.1200880583 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
16 Hb_059162_010 0.1205779689 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_006446_060 0.1219801439 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
18 Hb_005257_020 0.1221258439 - - PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Jatropha curcas]
19 Hb_006452_050 0.1240281076 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
20 Hb_010712_020 0.1258972855 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002234_150 Hb_002234_150 Hb_001080_310 Hb_001080_310 Hb_002234_150--Hb_001080_310 Hb_002311_050 Hb_002311_050 Hb_002234_150--Hb_002311_050 Hb_041769_010 Hb_041769_010 Hb_002234_150--Hb_041769_010 Hb_000365_300 Hb_000365_300 Hb_002234_150--Hb_000365_300 Hb_005731_080 Hb_005731_080 Hb_002234_150--Hb_005731_080 Hb_000251_100 Hb_000251_100 Hb_002234_150--Hb_000251_100 Hb_002281_070 Hb_002281_070 Hb_001080_310--Hb_002281_070 Hb_012019_030 Hb_012019_030 Hb_001080_310--Hb_012019_030 Hb_001141_170 Hb_001141_170 Hb_001080_310--Hb_001141_170 Hb_001047_250 Hb_001047_250 Hb_001080_310--Hb_001047_250 Hb_001999_220 Hb_001999_220 Hb_001080_310--Hb_001999_220 Hb_002311_050--Hb_000365_300 Hb_002311_050--Hb_005731_080 Hb_002311_050--Hb_001141_170 Hb_002311_050--Hb_012019_030 Hb_004195_040 Hb_004195_040 Hb_002311_050--Hb_004195_040 Hb_000813_120 Hb_000813_120 Hb_002311_050--Hb_000813_120 Hb_006446_060 Hb_006446_060 Hb_041769_010--Hb_006446_060 Hb_000101_050 Hb_000101_050 Hb_041769_010--Hb_000101_050 Hb_161393_010 Hb_161393_010 Hb_041769_010--Hb_161393_010 Hb_059162_010 Hb_059162_010 Hb_041769_010--Hb_059162_010 Hb_001621_140 Hb_001621_140 Hb_041769_010--Hb_001621_140 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040 Hb_000365_300--Hb_005731_080 Hb_000365_300--Hb_001141_170 Hb_000365_300--Hb_001080_310 Hb_000365_300--Hb_012019_030 Hb_002422_040 Hb_002422_040 Hb_000365_300--Hb_002422_040 Hb_005993_070 Hb_005993_070 Hb_005731_080--Hb_005993_070 Hb_002743_030 Hb_002743_030 Hb_005731_080--Hb_002743_030 Hb_005731_080--Hb_012019_030 Hb_006478_190 Hb_006478_190 Hb_005731_080--Hb_006478_190 Hb_005731_080--Hb_004195_040 Hb_000251_100--Hb_001080_310 Hb_005511_050 Hb_005511_050 Hb_000251_100--Hb_005511_050 Hb_002758_040 Hb_002758_040 Hb_000251_100--Hb_002758_040 Hb_000251_100--Hb_004185_040 Hb_000251_100--Hb_004195_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.56439 0.339313 0.315403 0.0583101 0.0516686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0536821 0.0844719 0.039863 12.6735 0.0888136

CAGE analysis