Hb_002234_170

Information

Type transcription factor
Description TF Family: FAR1
Location Contig2234: 129121-131526
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13550g
description POPTRDRAFT_570489; hypothetical protein
nr
ID XP_012090299.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067JEL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26147 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23179: 128111-129611 , PASA_asmbl_23180: 129852-130389 , PASA_asmbl_23181: 130648-130858 , PASA_asmbl_23182: 130984-131360 , PASA_asmbl_23183: 131450-131698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_170 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
2 Hb_003494_020 0.0490544719 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
3 Hb_002783_040 0.0553349289 transcription factor TF Family: IWS1 -
4 Hb_000049_260 0.0635062544 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_002798_070 0.0656364762 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
6 Hb_006649_050 0.0669894137 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
7 Hb_000574_400 0.0682049686 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
8 Hb_000684_250 0.0700882374 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
9 Hb_009851_070 0.0706827859 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
10 Hb_000174_270 0.0731551243 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
11 Hb_000172_430 0.0735226549 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001818_070 0.0738101798 - - carbon catabolite repressor protein, putative [Ricinus communis]
13 Hb_001004_060 0.0739022125 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
14 Hb_000009_600 0.0740926579 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
15 Hb_002818_030 0.0760321468 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
16 Hb_013399_100 0.0767943055 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001799_180 0.0769351861 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
18 Hb_062226_070 0.0772987523 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
19 Hb_002253_080 0.0776779125 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
20 Hb_001247_250 0.0781954123 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_170 Hb_002234_170 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002783_040 Hb_002783_040 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_000574_400 Hb_000574_400 Hb_002234_170--Hb_000574_400 Hb_000174_270 Hb_000174_270 Hb_003494_020--Hb_000174_270 Hb_000028_130 Hb_000028_130 Hb_003494_020--Hb_000028_130 Hb_000258_160 Hb_000258_160 Hb_003494_020--Hb_000258_160 Hb_062226_070 Hb_062226_070 Hb_003494_020--Hb_062226_070 Hb_002818_030 Hb_002818_030 Hb_003494_020--Hb_002818_030 Hb_002783_040--Hb_002798_070 Hb_000061_030 Hb_000061_030 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130 Hb_020831_030 Hb_020831_030 Hb_000049_260--Hb_020831_030 Hb_000049_260--Hb_002818_030 Hb_001195_530 Hb_001195_530 Hb_000049_260--Hb_001195_530 Hb_000049_260--Hb_002798_070 Hb_013399_100 Hb_013399_100 Hb_000049_260--Hb_013399_100 Hb_012779_090 Hb_012779_090 Hb_002798_070--Hb_012779_090 Hb_000243_250 Hb_000243_250 Hb_002798_070--Hb_000243_250 Hb_002798_070--Hb_002818_030 Hb_162275_050 Hb_162275_050 Hb_002798_070--Hb_162275_050 Hb_000442_010 Hb_000442_010 Hb_002798_070--Hb_000442_010 Hb_009767_110 Hb_009767_110 Hb_006649_050--Hb_009767_110 Hb_000165_250 Hb_000165_250 Hb_006649_050--Hb_000165_250 Hb_002725_120 Hb_002725_120 Hb_006649_050--Hb_002725_120 Hb_004225_050 Hb_004225_050 Hb_006649_050--Hb_004225_050 Hb_001198_100 Hb_001198_100 Hb_006649_050--Hb_001198_100 Hb_000291_050 Hb_000291_050 Hb_006649_050--Hb_000291_050 Hb_000574_400--Hb_002783_040 Hb_009486_060 Hb_009486_060 Hb_000574_400--Hb_009486_060 Hb_027346_010 Hb_027346_010 Hb_000574_400--Hb_027346_010 Hb_001205_230 Hb_001205_230 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.92058 4.53988 2.0234 2.58892 3.37474 3.50667
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.15517 2.97138 4.03099 2.22814 3.53998

CAGE analysis