Hb_002234_180

Information

Type -
Description -
Location Contig2234: 134254-139361
Sequence    

Annotation

kegg
ID rcu:RCOM_1496740
description hypothetical protein
nr
ID XP_002510825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L4D8
description Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1
trembl
ID B9R9F0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1496740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23185: 134185-139300
cDNA
(Sanger)
(ID:Location)		 022_N19.ab1: 134185-136560

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000331_680 0.0760256867 - - Protein bem46, putative [Ricinus communis]
3 Hb_000077_140 0.0828176809 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_010368_010 0.0868257035 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_181729_010 0.0885188016 - - PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Jatropha curcas]
6 Hb_003747_100 0.0892914281 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_004586_300 0.0974203687 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
8 Hb_000699_030 0.0981041681 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
9 Hb_001500_060 0.098697682 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
10 Hb_000069_380 0.0995797813 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
11 Hb_002232_410 0.1012055444 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
12 Hb_000930_030 0.101930041 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
13 Hb_000789_060 0.1050122043 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
14 Hb_000732_010 0.1054507487 - - PREDICTED: nitric oxide synthase-interacting protein [Pyrus x bretschneideri]
15 Hb_002686_170 0.1066284859 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
16 Hb_010519_050 0.1088624797 - - galactokinase, putative [Ricinus communis]
17 Hb_011129_040 0.1090502974 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
18 Hb_000958_110 0.1113707186 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
19 Hb_001699_220 0.1123529005 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
20 Hb_002016_170 0.1126386319 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002234_180 Hb_002234_180 Hb_000331_680 Hb_000331_680 Hb_002234_180--Hb_000331_680 Hb_000077_140 Hb_000077_140 Hb_002234_180--Hb_000077_140 Hb_010368_010 Hb_010368_010 Hb_002234_180--Hb_010368_010 Hb_181729_010 Hb_181729_010 Hb_002234_180--Hb_181729_010 Hb_003747_100 Hb_003747_100 Hb_002234_180--Hb_003747_100 Hb_004586_300 Hb_004586_300 Hb_002234_180--Hb_004586_300 Hb_000331_680--Hb_000077_140 Hb_005653_090 Hb_005653_090 Hb_000331_680--Hb_005653_090 Hb_003464_090 Hb_003464_090 Hb_000331_680--Hb_003464_090 Hb_000069_310 Hb_000069_310 Hb_000331_680--Hb_000069_310 Hb_002890_290 Hb_002890_290 Hb_000331_680--Hb_002890_290 Hb_000327_270 Hb_000327_270 Hb_000331_680--Hb_000327_270 Hb_000603_280 Hb_000603_280 Hb_000077_140--Hb_000603_280 Hb_002843_120 Hb_002843_120 Hb_000077_140--Hb_002843_120 Hb_003504_030 Hb_003504_030 Hb_000077_140--Hb_003504_030 Hb_000077_140--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_000077_140--Hb_000915_180 Hb_013358_040 Hb_013358_040 Hb_010368_010--Hb_013358_040 Hb_008013_050 Hb_008013_050 Hb_010368_010--Hb_008013_050 Hb_000699_030 Hb_000699_030 Hb_010368_010--Hb_000699_030 Hb_000729_030 Hb_000729_030 Hb_010368_010--Hb_000729_030 Hb_000336_150 Hb_000336_150 Hb_010368_010--Hb_000336_150 Hb_000069_380 Hb_000069_380 Hb_010368_010--Hb_000069_380 Hb_181729_010--Hb_010368_010 Hb_181729_010--Hb_008013_050 Hb_002016_170 Hb_002016_170 Hb_181729_010--Hb_002016_170 Hb_019280_050 Hb_019280_050 Hb_181729_010--Hb_019280_050 Hb_171376_010 Hb_171376_010 Hb_181729_010--Hb_171376_010 Hb_000808_030 Hb_000808_030 Hb_003747_100--Hb_000808_030 Hb_003747_100--Hb_000331_680 Hb_000120_130 Hb_000120_130 Hb_003747_100--Hb_000120_130 Hb_003747_100--Hb_000077_140 Hb_003747_100--Hb_003504_030 Hb_000964_130 Hb_000964_130 Hb_003747_100--Hb_000964_130 Hb_006059_040 Hb_006059_040 Hb_004586_300--Hb_006059_040 Hb_002232_410 Hb_002232_410 Hb_004586_300--Hb_002232_410 Hb_004586_300--Hb_000069_380 Hb_002445_060 Hb_002445_060 Hb_004586_300--Hb_002445_060 Hb_001221_110 Hb_001221_110 Hb_004586_300--Hb_001221_110 Hb_000120_170 Hb_000120_170 Hb_004586_300--Hb_000120_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.5281 29.489 25.0882 19.7342 12.0369 20.3223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.596 17.0013 27.2814 15.4552 19.1322

CAGE analysis