Hb_002234_190

Information

Type -
Description -
Location Contig2234: 140818-142529
Sequence    

Annotation

kegg
ID rcu:RCOM_1496730
description Nonspecific lipid-transfer protein precursor, putative
nr
ID XP_012090745.1
description PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JS02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26145 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23186: 140910-141262 , PASA_asmbl_23187: 142830-145684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_190 0.0 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
2 Hb_073395_010 0.1320298095 - - -
3 Hb_037767_010 0.1742279656 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_006502_050 0.191581488 - - -
5 Hb_081745_010 0.192809463 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
6 Hb_002876_290 0.193193446 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
7 Hb_001902_190 0.2125629388 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
8 Hb_001183_010 0.2171765163 - - -
9 Hb_000025_340 0.2198644066 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Jatropha curcas]
10 Hb_009476_140 0.2248762664 transcription factor TF Family: bHLH hypothetical protein RCOM_0838610 [Ricinus communis]
11 Hb_009393_170 0.2263483477 - - PREDICTED: vestitone reductase-like [Jatropha curcas]
12 Hb_077054_010 0.233404256 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_000426_030 0.2346745901 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
14 Hb_010727_010 0.2376383898 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
15 Hb_006588_150 0.241694296 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
16 Hb_001817_160 0.2434869729 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000302_260 0.2448355819 - - hypothetical protein [Bruguiera gymnorhiza]
18 Hb_001969_080 0.2452488729 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
19 Hb_164945_040 0.2496621255 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
20 Hb_005143_040 0.2507841612 - - hypothetical protein JCGZ_17315 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_190 Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_002234_190--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002234_190--Hb_037767_010 Hb_006502_050 Hb_006502_050 Hb_002234_190--Hb_006502_050 Hb_081745_010 Hb_081745_010 Hb_002234_190--Hb_081745_010 Hb_002876_290 Hb_002876_290 Hb_002234_190--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_002234_190--Hb_001902_190 Hb_000025_340 Hb_000025_340 Hb_073395_010--Hb_000025_340 Hb_073395_010--Hb_002876_290 Hb_073395_010--Hb_001902_190 Hb_145629_010 Hb_145629_010 Hb_073395_010--Hb_145629_010 Hb_005143_040 Hb_005143_040 Hb_073395_010--Hb_005143_040 Hb_037767_010--Hb_002876_290 Hb_037767_010--Hb_073395_010 Hb_037767_010--Hb_000025_340 Hb_000426_030 Hb_000426_030 Hb_037767_010--Hb_000426_030 Hb_002272_080 Hb_002272_080 Hb_037767_010--Hb_002272_080 Hb_006502_050--Hb_073395_010 Hb_021888_050 Hb_021888_050 Hb_006502_050--Hb_021888_050 Hb_006502_050--Hb_001902_190 Hb_000345_200 Hb_000345_200 Hb_006502_050--Hb_000345_200 Hb_000841_060 Hb_000841_060 Hb_006502_050--Hb_000841_060 Hb_010727_010 Hb_010727_010 Hb_081745_010--Hb_010727_010 Hb_001183_010 Hb_001183_010 Hb_081745_010--Hb_001183_010 Hb_141918_010 Hb_141918_010 Hb_081745_010--Hb_141918_010 Hb_081745_010--Hb_073395_010 Hb_164945_040 Hb_164945_040 Hb_081745_010--Hb_164945_040 Hb_006588_150 Hb_006588_150 Hb_002876_290--Hb_006588_150 Hb_009476_140 Hb_009476_140 Hb_002876_290--Hb_009476_140 Hb_003211_010 Hb_003211_010 Hb_002876_290--Hb_003211_010 Hb_002876_290--Hb_000025_340 Hb_004230_040 Hb_004230_040 Hb_001902_190--Hb_004230_040 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_000451_070 Hb_000451_070 Hb_001902_190--Hb_000451_070 Hb_115241_010 Hb_115241_010 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_002042_130 Hb_002042_130 Hb_001902_190--Hb_002042_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.548929 7.29555 0.189779 3.1891 0.828581 4.29184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.04595 2.86489 0.996106 2.66885 0.362635

CAGE analysis