Hb_002234_200

Information

Type -
Description -
Location Contig2234: 142805-145844
Sequence    

Annotation

kegg
ID rcu:RCOM_1496710
description KOM, putative (EC:3.4.21.105)
nr
ID XP_012090296.1
description PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID A0A067JHQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26144 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive rhomboid protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23187: 142830-145684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_200 0.0 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
2 Hb_001405_060 0.0739102758 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
3 Hb_005282_010 0.0838156192 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
4 Hb_013607_010 0.1064341025 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
5 Hb_000363_110 0.1066790211 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
6 Hb_008948_110 0.1143476934 - - PREDICTED: peroxidase 25 [Jatropha curcas]
7 Hb_098160_010 0.1145469251 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
8 Hb_029238_020 0.1197012319 - - PREDICTED: expansin-like A1 [Jatropha curcas]
9 Hb_002849_110 0.124239124 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
10 Hb_004112_050 0.1243723869 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
11 Hb_000000_070 0.1249666517 - - allene oxide synthase [Hevea brasiliensis]
12 Hb_000373_250 0.1250975028 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
13 Hb_001104_270 0.1257437038 - - hypothetical protein POPTR_0007s13980g [Populus trichocarpa]
14 Hb_007441_150 0.1267120578 - - Ankyrin repeat family protein [Theobroma cacao]
15 Hb_032260_100 0.1298119674 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
16 Hb_000397_090 0.1315517522 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
17 Hb_009476_010 0.1321436535 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
18 Hb_000567_110 0.1324614505 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
19 Hb_002936_030 0.1325929345 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
20 Hb_078901_010 0.134428628 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_200 Hb_002234_200 Hb_001405_060 Hb_001405_060 Hb_002234_200--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002234_200--Hb_005282_010 Hb_013607_010 Hb_013607_010 Hb_002234_200--Hb_013607_010 Hb_000363_110 Hb_000363_110 Hb_002234_200--Hb_000363_110 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_098160_010 Hb_098160_010 Hb_002234_200--Hb_098160_010 Hb_001405_060--Hb_005282_010 Hb_001405_060--Hb_098160_010 Hb_002849_110 Hb_002849_110 Hb_001405_060--Hb_002849_110 Hb_000373_250 Hb_000373_250 Hb_001405_060--Hb_000373_250 Hb_003633_150 Hb_003633_150 Hb_001405_060--Hb_003633_150 Hb_005282_010--Hb_000373_250 Hb_005282_010--Hb_003633_150 Hb_005282_010--Hb_002849_110 Hb_005282_010--Hb_098160_010 Hb_013607_010--Hb_000363_110 Hb_127400_010 Hb_127400_010 Hb_013607_010--Hb_127400_010 Hb_001568_120 Hb_001568_120 Hb_013607_010--Hb_001568_120 Hb_029238_020 Hb_029238_020 Hb_013607_010--Hb_029238_020 Hb_009510_050 Hb_009510_050 Hb_013607_010--Hb_009510_050 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_001345_030 Hb_001345_030 Hb_000363_110--Hb_001345_030 Hb_000363_110--Hb_098160_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_004112_050 Hb_004112_050 Hb_008948_110--Hb_004112_050 Hb_001956_160 Hb_001956_160 Hb_008948_110--Hb_001956_160 Hb_002218_080 Hb_002218_080 Hb_008948_110--Hb_002218_080 Hb_001310_080 Hb_001310_080 Hb_008948_110--Hb_001310_080 Hb_005694_150 Hb_005694_150 Hb_008948_110--Hb_005694_150 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66018 188.678 59.5842 71.4569 2.054 3.19942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04826 0.949638 1.03236 15.3849 25.0272

CAGE analysis