Hb_002235_050

Information

Type -
Description -
Location Contig2235: 21703-28372
Sequence    

Annotation

kegg
ID rcu:RCOM_0169190
description Chorismate mutase, chloroplast precursor, putative (EC:5.4.99.5)
nr
ID XP_012084763.1
description PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
swissprot
ID P42738
description Chorismate mutase 1, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=1 SV=3
trembl
ID A0A067JWL3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19892 PE=4 SV=1
Gene Ontology
ID GO:0005829
description chorismate mutase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23193: 21678-28315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_050 0.0 - - PREDICTED: chorismate mutase 1, chloroplastic [Jatropha curcas]
2 Hb_002913_010 0.1124296706 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
3 Hb_000679_110 0.1156795642 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
4 Hb_177321_040 0.1231430092 - - hypothetical protein JCGZ_06328 [Jatropha curcas]
5 Hb_010872_050 0.1284843323 - - hypothetical protein B456_007G078100 [Gossypium raimondii]
6 Hb_007185_040 0.1295426656 - - PREDICTED: pyrroline-5-carboxylate reductase [Jatropha curcas]
7 Hb_000678_010 0.1391326147 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
8 Hb_008749_020 0.1397294275 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007576_140 0.1416788671 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
10 Hb_001195_220 0.1425206556 - - sugar transporter, putative [Ricinus communis]
11 Hb_003659_010 0.1454834615 - - aldo/keto reductase AKR [Manihot esculenta]
12 Hb_000229_050 0.1470532182 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]
13 Hb_000406_090 0.1498444413 - - unknown [Populus trichocarpa]
14 Hb_001123_220 0.1548280381 - - -
15 Hb_000345_320 0.156650242 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
16 Hb_000907_150 0.1571071963 - - hypothetical protein L484_004295 [Morus notabilis]
17 Hb_172112_020 0.1576982732 - - PREDICTED: fumarylacetoacetase [Jatropha curcas]
18 Hb_001500_070 0.1580170853 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000465_150 0.1601610633 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
20 Hb_001946_220 0.1605448242 - - PREDICTED: signal peptidase complex catalytic subunit SEC11A-like [Jatropha curcas]

Gene co-expression network

sample Hb_002235_050 Hb_002235_050 Hb_002913_010 Hb_002913_010 Hb_002235_050--Hb_002913_010 Hb_000679_110 Hb_000679_110 Hb_002235_050--Hb_000679_110 Hb_177321_040 Hb_177321_040 Hb_002235_050--Hb_177321_040 Hb_010872_050 Hb_010872_050 Hb_002235_050--Hb_010872_050 Hb_007185_040 Hb_007185_040 Hb_002235_050--Hb_007185_040 Hb_000678_010 Hb_000678_010 Hb_002235_050--Hb_000678_010 Hb_002913_010--Hb_000678_010 Hb_000229_050 Hb_000229_050 Hb_002913_010--Hb_000229_050 Hb_000296_010 Hb_000296_010 Hb_002913_010--Hb_000296_010 Hb_000742_010 Hb_000742_010 Hb_002913_010--Hb_000742_010 Hb_133004_010 Hb_133004_010 Hb_002913_010--Hb_133004_010 Hb_001195_220 Hb_001195_220 Hb_000679_110--Hb_001195_220 Hb_000679_110--Hb_010872_050 Hb_007576_140 Hb_007576_140 Hb_000679_110--Hb_007576_140 Hb_129204_020 Hb_129204_020 Hb_000679_110--Hb_129204_020 Hb_003659_010 Hb_003659_010 Hb_000679_110--Hb_003659_010 Hb_001946_220 Hb_001946_220 Hb_177321_040--Hb_001946_220 Hb_177321_040--Hb_002913_010 Hb_177321_040--Hb_003659_010 Hb_001123_220 Hb_001123_220 Hb_177321_040--Hb_001123_220 Hb_177321_040--Hb_007576_140 Hb_016734_020 Hb_016734_020 Hb_010872_050--Hb_016734_020 Hb_010872_050--Hb_007185_040 Hb_011674_040 Hb_011674_040 Hb_010872_050--Hb_011674_040 Hb_006916_110 Hb_006916_110 Hb_010872_050--Hb_006916_110 Hb_000979_220 Hb_000979_220 Hb_010872_050--Hb_000979_220 Hb_000345_320 Hb_000345_320 Hb_010872_050--Hb_000345_320 Hb_172112_020 Hb_172112_020 Hb_007185_040--Hb_172112_020 Hb_001004_140 Hb_001004_140 Hb_007185_040--Hb_001004_140 Hb_002596_060 Hb_002596_060 Hb_007185_040--Hb_002596_060 Hb_007185_040--Hb_016734_020 Hb_107298_010 Hb_107298_010 Hb_007185_040--Hb_107298_010 Hb_005903_020 Hb_005903_020 Hb_000678_010--Hb_005903_020 Hb_000678_010--Hb_000229_050 Hb_000926_060 Hb_000926_060 Hb_000678_010--Hb_000926_060 Hb_011716_010 Hb_011716_010 Hb_000678_010--Hb_011716_010 Hb_000830_020 Hb_000830_020 Hb_000678_010--Hb_000830_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7798 18.6256 59.0582 21.3018 9.52161 7.16253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5448 12.1076 8.2264 69.9813 24.0324

CAGE analysis