Hb_002235_060

Information

Type -
Description -
Location Contig2235: 29280-31873
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12460g
description POPTRDRAFT_1105349; plastocyanin-like domain-containing family protein
nr
ID XP_002324082.1
description plastocyanin-like domain-containing family protein [Populus trichocarpa]
swissprot
ID Q39131
description Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
trembl
ID A9PAA9
description Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1
Gene Ontology
ID GO:0009055
description lamin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23193: 21678-28315 , PASA_asmbl_23194: 29288-31949
cDNA
(Sanger)
(ID:Location)		 008_M14.ab1: 29288-31426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_060 0.0 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
2 Hb_147245_010 0.085328979 - - casein kinase, putative [Ricinus communis]
3 Hb_002374_270 0.0988540803 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000922_320 0.1132438178 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
5 Hb_000000_480 0.1159262577 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
6 Hb_002325_060 0.1181355525 - - PREDICTED: ADP-ribosylation factor-like protein 8B-like [Glycine max]
7 Hb_000928_120 0.1226193453 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
8 Hb_003964_080 0.1306643668 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
9 Hb_001545_130 0.1308133497 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
10 Hb_004109_050 0.1318832442 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
11 Hb_004116_070 0.1331055787 - - PREDICTED: uncharacterized protein LOC105646325 [Jatropha curcas]
12 Hb_029253_010 0.1361156475 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
13 Hb_000940_210 0.1364199613 - - cyclophilin [Hevea brasiliensis]
14 Hb_002007_320 0.136626461 - - PREDICTED: mitogen-activated protein kinase kinase kinase ANP1 [Jatropha curcas]
15 Hb_000740_090 0.137665305 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004218_130 0.1389170215 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
17 Hb_000622_330 0.1392849251 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
18 Hb_000062_660 0.1398714931 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
19 Hb_018845_010 0.1404719392 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
20 Hb_002217_500 0.1413246313 - - hypothetical protein JCGZ_19014 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_060 Hb_002235_060 Hb_147245_010 Hb_147245_010 Hb_002235_060--Hb_147245_010 Hb_002374_270 Hb_002374_270 Hb_002235_060--Hb_002374_270 Hb_000922_320 Hb_000922_320 Hb_002235_060--Hb_000922_320 Hb_000000_480 Hb_000000_480 Hb_002235_060--Hb_000000_480 Hb_002325_060 Hb_002325_060 Hb_002235_060--Hb_002325_060 Hb_000928_120 Hb_000928_120 Hb_002235_060--Hb_000928_120 Hb_001545_130 Hb_001545_130 Hb_147245_010--Hb_001545_130 Hb_007537_030 Hb_007537_030 Hb_147245_010--Hb_007537_030 Hb_147245_010--Hb_000928_120 Hb_004109_050 Hb_004109_050 Hb_147245_010--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_147245_010--Hb_000152_710 Hb_029253_010 Hb_029253_010 Hb_002374_270--Hb_029253_010 Hb_000940_210 Hb_000940_210 Hb_002374_270--Hb_000940_210 Hb_003964_080 Hb_003964_080 Hb_002374_270--Hb_003964_080 Hb_003894_030 Hb_003894_030 Hb_002374_270--Hb_003894_030 Hb_005357_110 Hb_005357_110 Hb_002374_270--Hb_005357_110 Hb_000922_320--Hb_029253_010 Hb_000922_320--Hb_000000_480 Hb_000922_320--Hb_002325_060 Hb_000757_130 Hb_000757_130 Hb_000922_320--Hb_000757_130 Hb_012762_040 Hb_012762_040 Hb_000922_320--Hb_012762_040 Hb_004218_130 Hb_004218_130 Hb_000000_480--Hb_004218_130 Hb_000000_480--Hb_012762_040 Hb_000622_330 Hb_000622_330 Hb_000000_480--Hb_000622_330 Hb_000098_180 Hb_000098_180 Hb_000000_480--Hb_000098_180 Hb_000000_480--Hb_000928_120 Hb_000000_480--Hb_029253_010 Hb_002325_060--Hb_000622_330 Hb_003670_030 Hb_003670_030 Hb_002325_060--Hb_003670_030 Hb_004218_120 Hb_004218_120 Hb_002325_060--Hb_004218_120 Hb_005054_020 Hb_005054_020 Hb_002325_060--Hb_005054_020 Hb_002281_010 Hb_002281_010 Hb_002325_060--Hb_002281_010 Hb_004522_030 Hb_004522_030 Hb_000928_120--Hb_004522_030 Hb_000283_140 Hb_000283_140 Hb_000928_120--Hb_000283_140 Hb_003001_130 Hb_003001_130 Hb_000928_120--Hb_003001_130 Hb_000928_120--Hb_000622_330 Hb_000570_020 Hb_000570_020 Hb_000928_120--Hb_000570_020 Hb_000928_120--Hb_007537_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57251 26.5083 44.5541 78.2463 6.72984 4.53066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6932 11.3265 10.1109 19.4482 20.9057

CAGE analysis