Hb_002235_070

Information

Type -
Description -
Location Contig2235: 36936-39776
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12030g
description POPTRDRAFT_859293; hypothetical protein
nr
ID XP_012084760.1
description PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19889 PE=4 SV=1
Gene Ontology
ID GO:0000023
description PREDICTED: uncharacterized protein LOC105644108

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23196: 38959-39168 , PASA_asmbl_23197: 37181-39406
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_070 0.0 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
2 Hb_000950_020 0.0966557896 - - PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Jatropha curcas]
3 Hb_000190_230 0.0990469742 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
4 Hb_003602_100 0.1069374627 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
5 Hb_007803_040 0.1165133336 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
6 Hb_000049_100 0.1168008678 - - Photosystem II reaction center W protein, putative [Ricinus communis]
7 Hb_006970_030 0.1169082239 - - synaptotagmin, putative [Ricinus communis]
8 Hb_002475_060 0.1183628025 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
9 Hb_002495_090 0.1230139191 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
10 Hb_000544_070 0.12360605 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
11 Hb_010326_020 0.1279712831 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
12 Hb_003120_020 0.1309457079 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
13 Hb_001195_290 0.1310802915 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
14 Hb_000590_110 0.1319432051 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001682_020 0.1319665747 - - PREDICTED: uncharacterized protein LOC105628366 [Jatropha curcas]
16 Hb_009838_070 0.132310184 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic [Jatropha curcas]
17 Hb_021531_010 0.1324688769 - - receptor-kinase, putative [Ricinus communis]
18 Hb_000856_280 0.1346311766 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
19 Hb_000369_110 0.135454422 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_004920_020 0.1357663073 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]

Gene co-expression network

sample Hb_002235_070 Hb_002235_070 Hb_000950_020 Hb_000950_020 Hb_002235_070--Hb_000950_020 Hb_000190_230 Hb_000190_230 Hb_002235_070--Hb_000190_230 Hb_003602_100 Hb_003602_100 Hb_002235_070--Hb_003602_100 Hb_007803_040 Hb_007803_040 Hb_002235_070--Hb_007803_040 Hb_000049_100 Hb_000049_100 Hb_002235_070--Hb_000049_100 Hb_006970_030 Hb_006970_030 Hb_002235_070--Hb_006970_030 Hb_004920_020 Hb_004920_020 Hb_000950_020--Hb_004920_020 Hb_000950_020--Hb_006970_030 Hb_000711_030 Hb_000711_030 Hb_000950_020--Hb_000711_030 Hb_001159_070 Hb_001159_070 Hb_000950_020--Hb_001159_070 Hb_000544_070 Hb_000544_070 Hb_000950_020--Hb_000544_070 Hb_019654_180 Hb_019654_180 Hb_000190_230--Hb_019654_180 Hb_000190_230--Hb_000950_020 Hb_000190_230--Hb_000711_030 Hb_009838_070 Hb_009838_070 Hb_000190_230--Hb_009838_070 Hb_000590_110 Hb_000590_110 Hb_000190_230--Hb_000590_110 Hb_002249_090 Hb_002249_090 Hb_003602_100--Hb_002249_090 Hb_001195_290 Hb_001195_290 Hb_003602_100--Hb_001195_290 Hb_003120_020 Hb_003120_020 Hb_003602_100--Hb_003120_020 Hb_010326_020 Hb_010326_020 Hb_003602_100--Hb_010326_020 Hb_003602_100--Hb_000049_100 Hb_003602_100--Hb_007803_040 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_007803_040--Hb_000544_070 Hb_000390_160 Hb_000390_160 Hb_000049_100--Hb_000390_160 Hb_000254_130 Hb_000254_130 Hb_000049_100--Hb_000254_130 Hb_000049_100--Hb_003120_020 Hb_002375_030 Hb_002375_030 Hb_000049_100--Hb_002375_030 Hb_003632_020 Hb_003632_020 Hb_000049_100--Hb_003632_020 Hb_000049_100--Hb_010326_020 Hb_153258_040 Hb_153258_040 Hb_006970_030--Hb_153258_040 Hb_003777_080 Hb_003777_080 Hb_006970_030--Hb_003777_080 Hb_000140_460 Hb_000140_460 Hb_006970_030--Hb_000140_460 Hb_004970_060 Hb_004970_060 Hb_006970_030--Hb_004970_060 Hb_006970_030--Hb_000049_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.495921 0.835015 15.0591 7.44565 1.20123 0.0817775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.14166 0.250741 0.0521109 0.957907 22.3889

CAGE analysis