Hb_002235_100

Information

Type transcription factor
Description TF Family: WRKY
Location Contig2235: 57196-62770
Sequence    

Annotation

kegg
ID rcu:RCOM_0538580
description WRKY transcription factor, putative
nr
ID XP_012084758.1
description PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
swissprot
ID Q9XI90
description Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2
trembl
ID M9TIP9
description Uncharacterized protein OS=Jatropha curcas GN=WRKY06 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23201: 57356-63291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_100 0.0 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 isoform X1 [Jatropha curcas]
2 Hb_020025_010 0.1146243697 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
3 Hb_000909_080 0.1222294405 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
4 Hb_000204_070 0.125149013 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
5 Hb_001214_050 0.1266076782 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
6 Hb_034083_020 0.1337382094 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000111_110 0.1361074145 - - Uncharacterized protein isoform 1 [Theobroma cacao]
8 Hb_113347_010 0.1383718032 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]
9 Hb_000358_020 0.1413990706 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
10 Hb_004291_040 0.1424920152 - - hexokinase [Manihot esculenta]
11 Hb_000914_100 0.1427073534 - - unknown [Glycine max]
12 Hb_004218_180 0.143318535 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
13 Hb_000197_220 0.1443928082 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_001159_010 0.1494633148 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001105_100 0.14963085 - - PREDICTED: cathepsin B [Jatropha curcas]
16 Hb_000983_070 0.1516261537 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003440_020 0.1523330773 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
18 Hb_009778_060 0.1529345389 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
19 Hb_005218_080 0.153424739 - - PREDICTED: branched-chain-amino-acid aminotransferase 3, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_003549_050 0.1542410694 - - PREDICTED: zinc phosphodiesterase ELAC protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_002235_100 Hb_002235_100 Hb_020025_010 Hb_020025_010 Hb_002235_100--Hb_020025_010 Hb_000909_080 Hb_000909_080 Hb_002235_100--Hb_000909_080 Hb_000204_070 Hb_000204_070 Hb_002235_100--Hb_000204_070 Hb_001214_050 Hb_001214_050 Hb_002235_100--Hb_001214_050 Hb_034083_020 Hb_034083_020 Hb_002235_100--Hb_034083_020 Hb_000111_110 Hb_000111_110 Hb_002235_100--Hb_000111_110 Hb_000035_480 Hb_000035_480 Hb_020025_010--Hb_000035_480 Hb_000077_150 Hb_000077_150 Hb_020025_010--Hb_000077_150 Hb_002303_020 Hb_002303_020 Hb_020025_010--Hb_002303_020 Hb_003994_160 Hb_003994_160 Hb_020025_010--Hb_003994_160 Hb_020025_010--Hb_001214_050 Hb_000358_020 Hb_000358_020 Hb_000909_080--Hb_000358_020 Hb_000909_080--Hb_034083_020 Hb_003440_020 Hb_003440_020 Hb_000909_080--Hb_003440_020 Hb_055690_010 Hb_055690_010 Hb_000909_080--Hb_055690_010 Hb_000365_010 Hb_000365_010 Hb_000909_080--Hb_000365_010 Hb_001105_100 Hb_001105_100 Hb_000909_080--Hb_001105_100 Hb_004218_180 Hb_004218_180 Hb_000204_070--Hb_004218_180 Hb_004785_080 Hb_004785_080 Hb_000204_070--Hb_004785_080 Hb_004306_120 Hb_004306_120 Hb_000204_070--Hb_004306_120 Hb_002908_040 Hb_002908_040 Hb_000204_070--Hb_002908_040 Hb_003849_280 Hb_003849_280 Hb_000204_070--Hb_003849_280 Hb_001478_010 Hb_001478_010 Hb_000204_070--Hb_001478_010 Hb_002762_110 Hb_002762_110 Hb_001214_050--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_001214_050--Hb_000077_150 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770 Hb_001159_010 Hb_001159_010 Hb_034083_020--Hb_001159_010 Hb_001951_060 Hb_001951_060 Hb_034083_020--Hb_001951_060 Hb_034083_020--Hb_000358_020 Hb_005218_080 Hb_005218_080 Hb_034083_020--Hb_005218_080 Hb_034083_020--Hb_000365_010 Hb_000111_110--Hb_001214_050 Hb_000676_200 Hb_000676_200 Hb_000111_110--Hb_000676_200 Hb_002631_250 Hb_002631_250 Hb_000111_110--Hb_002631_250 Hb_000010_290 Hb_000010_290 Hb_000111_110--Hb_000010_290 Hb_000111_110--Hb_020025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94196 6.87521 7.35712 5.2299 2.8876 3.11009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.81386 10.3575 3.53401 11.068 19.8918

CAGE analysis