Hb_002235_120

Information

Type -
Description -
Location Contig2235: 71795-72445
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023969mg
description hypothetical protein
nr
ID KJB13963.1
description hypothetical protein B456_002G103400 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NKU7
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G103400 PE=4 SV=1
Gene Ontology
ID GO:0005488
description desiccation-related protein pcc13-62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23209: 72033-72332
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_120 0.0 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
2 Hb_005408_020 0.1389960446 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004376_030 0.1442596036 transcription factor TF Family: mTERF hypothetical protein PHAVU_005G060900g [Phaseolus vulgaris]
4 Hb_005462_020 0.1449746101 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
5 Hb_002320_070 0.1466370525 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002903_080 0.1473494658 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
7 Hb_003436_050 0.1479188525 - - arf gtpase-activating protein, putative [Ricinus communis]
8 Hb_034552_020 0.1490429272 - - -
9 Hb_008029_020 0.1502445674 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
10 Hb_019053_020 0.1514799056 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
11 Hb_015099_010 0.1516224204 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
12 Hb_000329_490 0.1520664291 - - hypothetical protein JCGZ_14582 [Jatropha curcas]
13 Hb_002307_350 0.1522425218 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
14 Hb_000951_110 0.1534050507 - - heat shock protein, putative [Ricinus communis]
15 Hb_000021_040 0.1536774374 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
16 Hb_000021_020 0.1558797911 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Malus domestica]
17 Hb_000441_180 0.1561665091 - - Early endosome antigen, putative [Ricinus communis]
18 Hb_001473_090 0.1562665912 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
19 Hb_000261_520 0.1565158113 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
20 Hb_000671_110 0.1569219678 - - hypothetical protein JCGZ_23794 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_120 Hb_002235_120 Hb_005408_020 Hb_005408_020 Hb_002235_120--Hb_005408_020 Hb_004376_030 Hb_004376_030 Hb_002235_120--Hb_004376_030 Hb_005462_020 Hb_005462_020 Hb_002235_120--Hb_005462_020 Hb_002320_070 Hb_002320_070 Hb_002235_120--Hb_002320_070 Hb_002903_080 Hb_002903_080 Hb_002235_120--Hb_002903_080 Hb_003436_050 Hb_003436_050 Hb_002235_120--Hb_003436_050 Hb_002307_350 Hb_002307_350 Hb_005408_020--Hb_002307_350 Hb_011609_170 Hb_011609_170 Hb_005408_020--Hb_011609_170 Hb_000914_080 Hb_000914_080 Hb_005408_020--Hb_000914_080 Hb_008725_130 Hb_008725_130 Hb_005408_020--Hb_008725_130 Hb_009151_020 Hb_009151_020 Hb_005408_020--Hb_009151_020 Hb_030827_030 Hb_030827_030 Hb_005408_020--Hb_030827_030 Hb_004376_030--Hb_005408_020 Hb_004376_030--Hb_000914_080 Hb_004920_060 Hb_004920_060 Hb_004376_030--Hb_004920_060 Hb_000261_520 Hb_000261_520 Hb_004376_030--Hb_000261_520 Hb_000640_220 Hb_000640_220 Hb_004376_030--Hb_000640_220 Hb_078477_040 Hb_078477_040 Hb_004376_030--Hb_078477_040 Hb_005462_020--Hb_078477_040 Hb_004970_160 Hb_004970_160 Hb_005462_020--Hb_004970_160 Hb_006829_090 Hb_006829_090 Hb_005462_020--Hb_006829_090 Hb_006002_030 Hb_006002_030 Hb_005462_020--Hb_006002_030 Hb_022250_110 Hb_022250_110 Hb_005462_020--Hb_022250_110 Hb_000120_620 Hb_000120_620 Hb_005462_020--Hb_000120_620 Hb_002320_070--Hb_005408_020 Hb_073973_160 Hb_073973_160 Hb_002320_070--Hb_073973_160 Hb_010925_020 Hb_010925_020 Hb_002320_070--Hb_010925_020 Hb_002320_070--Hb_002307_350 Hb_003894_040 Hb_003894_040 Hb_002320_070--Hb_003894_040 Hb_009119_030 Hb_009119_030 Hb_002320_070--Hb_009119_030 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_081879_030 Hb_081879_030 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_000029_320 Hb_000029_320 Hb_003436_050--Hb_000029_320 Hb_012404_070 Hb_012404_070 Hb_003436_050--Hb_012404_070 Hb_003029_130 Hb_003029_130 Hb_003436_050--Hb_003029_130 Hb_002249_120 Hb_002249_120 Hb_003436_050--Hb_002249_120 Hb_017895_020 Hb_017895_020 Hb_003436_050--Hb_017895_020 Hb_001473_090 Hb_001473_090 Hb_003436_050--Hb_001473_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.0739 1.50288 1.99334 1.84156 5.22173 5.87522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.26891 0.915953 0.996983 1.72593 1.10422

CAGE analysis