Hb_002235_150

Information

Type -
Description -
Location Contig2235: 88415-89254
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23212: 88398-91528
cDNA
(Sanger)
(ID:Location)		 011_M02.ab1: 88398-91528

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_150 0.0 - - -
2 Hb_003106_130 0.09336298 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
3 Hb_003746_040 0.0943164165 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
4 Hb_002408_010 0.1041723445 - - cation-transporting atpase plant, putative [Ricinus communis]
5 Hb_003120_060 0.106379326 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
6 Hb_000622_100 0.112110778 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
7 Hb_043302_010 0.1139427467 - - ADP,ATP carrier protein, putative [Ricinus communis]
8 Hb_004204_200 0.1141835274 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
9 Hb_119583_010 0.11466666 - - 60S ribosomal protein L12A [Hevea brasiliensis]
10 Hb_000019_230 0.1148538892 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
11 Hb_000384_090 0.1152176866 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
12 Hb_001047_100 0.1154388336 - - 40S ribosomal protein S18, putative [Ricinus communis]
13 Hb_033642_020 0.1157839034 - - hypothetical protein JCGZ_19094 [Jatropha curcas]
14 Hb_004944_010 0.116453993 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
15 Hb_000349_060 0.1170417674 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_000290_020 0.117254131 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
17 Hb_004198_010 0.1183040543 - - Eukaryotic translation initiation factor 2 subunit beta [Theobroma cacao]
18 Hb_005735_030 0.1183822085 - - conserved hypothetical protein [Ricinus communis]
19 Hb_073367_010 0.1193390219 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
20 Hb_141131_010 0.1205521967 - - Diphthamide biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002235_150 Hb_002235_150 Hb_003106_130 Hb_003106_130 Hb_002235_150--Hb_003106_130 Hb_003746_040 Hb_003746_040 Hb_002235_150--Hb_003746_040 Hb_002408_010 Hb_002408_010 Hb_002235_150--Hb_002408_010 Hb_003120_060 Hb_003120_060 Hb_002235_150--Hb_003120_060 Hb_000622_100 Hb_000622_100 Hb_002235_150--Hb_000622_100 Hb_043302_010 Hb_043302_010 Hb_002235_150--Hb_043302_010 Hb_003106_130--Hb_003120_060 Hb_119583_010 Hb_119583_010 Hb_003106_130--Hb_119583_010 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_001047_100 Hb_001047_100 Hb_003746_040--Hb_001047_100 Hb_011828_050 Hb_011828_050 Hb_003746_040--Hb_011828_050 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_105386_010 Hb_105386_010 Hb_003746_040--Hb_105386_010 Hb_000290_020 Hb_000290_020 Hb_003746_040--Hb_000290_020 Hb_002408_010--Hb_000019_230 Hb_002408_010--Hb_003120_060 Hb_000608_030 Hb_000608_030 Hb_002408_010--Hb_000608_030 Hb_005928_060 Hb_005928_060 Hb_002408_010--Hb_005928_060 Hb_000384_090 Hb_000384_090 Hb_002408_010--Hb_000384_090 Hb_000009_550 Hb_000009_550 Hb_002408_010--Hb_000009_550 Hb_003120_060--Hb_000019_230 Hb_001214_130 Hb_001214_130 Hb_003120_060--Hb_001214_130 Hb_000188_100 Hb_000188_100 Hb_003120_060--Hb_000188_100 Hb_003005_020 Hb_003005_020 Hb_003120_060--Hb_003005_020 Hb_003038_030 Hb_003038_030 Hb_003120_060--Hb_003038_030 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_011174_010 Hb_011174_010 Hb_000622_100--Hb_011174_010 Hb_073367_010 Hb_073367_010 Hb_000622_100--Hb_073367_010 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_000622_100--Hb_119583_010 Hb_043302_010--Hb_011828_050 Hb_009767_120 Hb_009767_120 Hb_043302_010--Hb_009767_120 Hb_000690_080 Hb_000690_080 Hb_043302_010--Hb_000690_080 Hb_004204_200 Hb_004204_200 Hb_043302_010--Hb_004204_200 Hb_004944_010 Hb_004944_010 Hb_043302_010--Hb_004944_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.6481 10.4764 11.3466 18.7887 58.6985 69.9242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.3681 43.6284 15.2003 8.84922 7.53455

CAGE analysis