Hb_002235_170

Information

Type -
Description -
Location Contig2235: 108369-110696
Sequence    

Annotation

kegg
ID cic:CICLE_v100116002m
description hypothetical protein
nr
ID KDO72657.1
description hypothetical protein CISIN_1g010208mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067FZ90
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g010208mg PE=4 SV=1
Gene Ontology
ID GO:0000152
description snf1-related protein kinase catalytic subunit alpha kin10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23214: 93802-110645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_170 0.0 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]
2 Hb_001492_020 0.0491990463 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
3 Hb_001314_010 0.0693814173 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 1-like [Jatropha curcas]
4 Hb_105328_020 0.0696438792 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
5 Hb_000127_040 0.0713044511 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
6 Hb_000862_030 0.0729760859 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
7 Hb_002213_070 0.075193797 - - epsilon-adaptin family protein [Populus trichocarpa]
8 Hb_007336_010 0.0760219538 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
9 Hb_000083_160 0.0766307103 - - Cell division cycle protein, putative [Ricinus communis]
10 Hb_004935_030 0.0770717257 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
11 Hb_001635_090 0.0777351666 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
12 Hb_028512_020 0.0788282459 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
13 Hb_000640_120 0.0822998318 - - PREDICTED: uncharacterized protein LOC105642625 [Jatropha curcas]
14 Hb_005731_120 0.0834312837 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
15 Hb_001635_160 0.0834511709 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
16 Hb_000345_380 0.0842191052 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
17 Hb_011037_030 0.0852633868 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
18 Hb_000789_310 0.0856332223 - - PREDICTED: E3 ubiquitin-protein ligase PRT1 [Jatropha curcas]
19 Hb_000613_050 0.0856824259 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
20 Hb_000347_180 0.0872766068 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002235_170 Hb_002235_170 Hb_001492_020 Hb_001492_020 Hb_002235_170--Hb_001492_020 Hb_001314_010 Hb_001314_010 Hb_002235_170--Hb_001314_010 Hb_105328_020 Hb_105328_020 Hb_002235_170--Hb_105328_020 Hb_000127_040 Hb_000127_040 Hb_002235_170--Hb_000127_040 Hb_000862_030 Hb_000862_030 Hb_002235_170--Hb_000862_030 Hb_002213_070 Hb_002213_070 Hb_002235_170--Hb_002213_070 Hb_001492_020--Hb_002213_070 Hb_000640_120 Hb_000640_120 Hb_001492_020--Hb_000640_120 Hb_007336_010 Hb_007336_010 Hb_001492_020--Hb_007336_010 Hb_000120_060 Hb_000120_060 Hb_001492_020--Hb_000120_060 Hb_001492_020--Hb_001314_010 Hb_001617_060 Hb_001617_060 Hb_001314_010--Hb_001617_060 Hb_000083_160 Hb_000083_160 Hb_001314_010--Hb_000083_160 Hb_100215_010 Hb_100215_010 Hb_001314_010--Hb_100215_010 Hb_001635_090 Hb_001635_090 Hb_001314_010--Hb_001635_090 Hb_000170_090 Hb_000170_090 Hb_105328_020--Hb_000170_090 Hb_000345_380 Hb_000345_380 Hb_105328_020--Hb_000345_380 Hb_011037_030 Hb_011037_030 Hb_105328_020--Hb_011037_030 Hb_006588_170 Hb_006588_170 Hb_105328_020--Hb_006588_170 Hb_013399_020 Hb_013399_020 Hb_105328_020--Hb_013399_020 Hb_000156_010 Hb_000156_010 Hb_105328_020--Hb_000156_010 Hb_000127_040--Hb_002213_070 Hb_004935_030 Hb_004935_030 Hb_000127_040--Hb_004935_030 Hb_007803_050 Hb_007803_050 Hb_000127_040--Hb_007803_050 Hb_000457_260 Hb_000457_260 Hb_000127_040--Hb_000457_260 Hb_032050_040 Hb_032050_040 Hb_000127_040--Hb_032050_040 Hb_054865_150 Hb_054865_150 Hb_000127_040--Hb_054865_150 Hb_004127_030 Hb_004127_030 Hb_000862_030--Hb_004127_030 Hb_000862_030--Hb_001492_020 Hb_000862_030--Hb_002213_070 Hb_004689_050 Hb_004689_050 Hb_000862_030--Hb_004689_050 Hb_002675_070 Hb_002675_070 Hb_000862_030--Hb_002675_070 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000890_210 Hb_000890_210 Hb_002213_070--Hb_000890_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3518 25.1166 17.8966 35.6299 21.4015 45.7566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.9511 18.4952 21.008 30.7911 20.8818

CAGE analysis