Hb_002235_180

Information

Type transcription factor
Description TF Family: ERF
Location Contig2235: 113095-114524
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12370g
description POPTRDRAFT_778552; hypothetical protein
nr
ID XP_011035804.1
description PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9IK18
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12370g PE=4 SV=2
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor rap2-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_180 0.0 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
2 Hb_004968_010 0.2452335727 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
3 Hb_000787_010 0.2464325039 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
4 Hb_000803_250 0.2761604042 - - PREDICTED: uncharacterized protein LOC105648317 isoform X1 [Jatropha curcas]
5 Hb_099990_030 0.2903917575 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_000661_280 0.3005209522 - - PREDICTED: protein TRAUCO [Jatropha curcas]
7 Hb_001004_050 0.305588589 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
8 Hb_029689_010 0.3072880935 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_002447_160 0.3104432564 - - -
10 Hb_000663_030 0.3109301405 - - -
11 Hb_003292_060 0.3112751422 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
12 Hb_004021_090 0.3118439942 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
13 Hb_010423_010 0.3146925332 - - -
14 Hb_003768_060 0.3153408007 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
15 Hb_122259_010 0.3157747887 - - -
16 Hb_001124_030 0.3179744842 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
17 Hb_002233_070 0.3211513991 - - unnamed protein product [Vitis vinifera]
18 Hb_078954_010 0.3268078234 - - hypothetical protein RCOM_0841800 [Ricinus communis]
19 Hb_114250_010 0.3281376335 - - conserved hypothetical protein [Ricinus communis]
20 Hb_065755_020 0.3297129012 - - choline monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002235_180 Hb_002235_180 Hb_004968_010 Hb_004968_010 Hb_002235_180--Hb_004968_010 Hb_000787_010 Hb_000787_010 Hb_002235_180--Hb_000787_010 Hb_000803_250 Hb_000803_250 Hb_002235_180--Hb_000803_250 Hb_099990_030 Hb_099990_030 Hb_002235_180--Hb_099990_030 Hb_000661_280 Hb_000661_280 Hb_002235_180--Hb_000661_280 Hb_001004_050 Hb_001004_050 Hb_002235_180--Hb_001004_050 Hb_004968_010--Hb_099990_030 Hb_001124_030 Hb_001124_030 Hb_004968_010--Hb_001124_030 Hb_004968_010--Hb_000787_010 Hb_003292_060 Hb_003292_060 Hb_004968_010--Hb_003292_060 Hb_000663_030 Hb_000663_030 Hb_004968_010--Hb_000663_030 Hb_000787_010--Hb_099990_030 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_028639_040 Hb_028639_040 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_078954_010 Hb_078954_010 Hb_000803_250--Hb_078954_010 Hb_025964_040 Hb_025964_040 Hb_000803_250--Hb_025964_040 Hb_003599_020 Hb_003599_020 Hb_000803_250--Hb_003599_020 Hb_001817_130 Hb_001817_130 Hb_000803_250--Hb_001817_130 Hb_032202_050 Hb_032202_050 Hb_000803_250--Hb_032202_050 Hb_065755_020 Hb_065755_020 Hb_000803_250--Hb_065755_020 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_167508_010 Hb_167508_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010 Hb_001277_040 Hb_001277_040 Hb_000661_280--Hb_001277_040 Hb_008112_010 Hb_008112_010 Hb_000661_280--Hb_008112_010 Hb_011689_100 Hb_011689_100 Hb_000661_280--Hb_011689_100 Hb_000638_150 Hb_000638_150 Hb_000661_280--Hb_000638_150 Hb_000840_070 Hb_000840_070 Hb_000661_280--Hb_000840_070 Hb_004667_040 Hb_004667_040 Hb_000661_280--Hb_004667_040 Hb_009979_010 Hb_009979_010 Hb_001004_050--Hb_009979_010 Hb_002447_160 Hb_002447_160 Hb_001004_050--Hb_002447_160 Hb_183192_010 Hb_183192_010 Hb_001004_050--Hb_183192_010 Hb_001141_200 Hb_001141_200 Hb_001004_050--Hb_001141_200 Hb_001004_050--Hb_004021_090 Hb_096473_010 Hb_096473_010 Hb_001004_050--Hb_096473_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.300367 0.292881 0.195202 0.0907824 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0212645 0.055502

CAGE analysis