Hb_002235_210

Information

Type -
Description -
Location Contig2235: 148912-151891
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11470g
description POPTRDRAFT_831233; hypothetical protein
nr
ID XP_011010301.1
description PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
swissprot
ID Q9LVP9
description Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1
trembl
ID A9P918
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s11470g PE=2 SV=1
Gene Ontology
ID GO:0005794
description vesicle transport v-snare 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23220: 148944-151807 , PASA_asmbl_23221: 149031-151863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_210 0.0 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
2 Hb_004631_180 0.0704989312 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
3 Hb_001051_080 0.0727137395 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
4 Hb_003893_030 0.0759201691 - - Protein yrdA, putative [Ricinus communis]
5 Hb_012322_020 0.0789087093 - - -
6 Hb_006916_040 0.0794634914 - - 60S ribosomal protein L7a, putative [Ricinus communis]
7 Hb_004310_020 0.0811480224 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
8 Hb_006588_070 0.0820814344 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
9 Hb_005000_320 0.0844008043 - - PREDICTED: casein kinase I isoform delta-like [Jatropha curcas]
10 Hb_000309_040 0.0852083189 - - PREDICTED: protein farnesyltransferase subunit beta isoform X1 [Jatropha curcas]
11 Hb_001135_130 0.0854907449 - - hypothetical protein CISIN_1g0171752mg, partial [Citrus sinensis]
12 Hb_000982_060 0.0858713812 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
13 Hb_000025_630 0.0895102077 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
14 Hb_000576_020 0.0924409875 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
15 Hb_003549_150 0.0943661617 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_000076_160 0.0949585514 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
17 Hb_027428_010 0.0952311598 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
18 Hb_002530_010 0.0973112444 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
19 Hb_007416_300 0.0981049138 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
20 Hb_172632_120 0.0985188209 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002235_210 Hb_002235_210 Hb_004631_180 Hb_004631_180 Hb_002235_210--Hb_004631_180 Hb_001051_080 Hb_001051_080 Hb_002235_210--Hb_001051_080 Hb_003893_030 Hb_003893_030 Hb_002235_210--Hb_003893_030 Hb_012322_020 Hb_012322_020 Hb_002235_210--Hb_012322_020 Hb_006916_040 Hb_006916_040 Hb_002235_210--Hb_006916_040 Hb_004310_020 Hb_004310_020 Hb_002235_210--Hb_004310_020 Hb_004631_180--Hb_006916_040 Hb_000576_020 Hb_000576_020 Hb_004631_180--Hb_000576_020 Hb_004631_180--Hb_001051_080 Hb_000120_430 Hb_000120_430 Hb_004631_180--Hb_000120_430 Hb_000256_190 Hb_000256_190 Hb_004631_180--Hb_000256_190 Hb_007416_300 Hb_007416_300 Hb_001051_080--Hb_007416_300 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_000982_060 Hb_000982_060 Hb_003893_030--Hb_000982_060 Hb_000442_150 Hb_000442_150 Hb_003893_030--Hb_000442_150 Hb_005271_220 Hb_005271_220 Hb_003893_030--Hb_005271_220 Hb_002311_180 Hb_002311_180 Hb_003893_030--Hb_002311_180 Hb_000521_320 Hb_000521_320 Hb_003893_030--Hb_000521_320 Hb_000146_050 Hb_000146_050 Hb_012322_020--Hb_000146_050 Hb_000009_400 Hb_000009_400 Hb_012322_020--Hb_000009_400 Hb_012322_020--Hb_001051_080 Hb_001635_160 Hb_001635_160 Hb_012322_020--Hb_001635_160 Hb_172632_120 Hb_172632_120 Hb_012322_020--Hb_172632_120 Hb_006916_040--Hb_000576_020 Hb_006916_040--Hb_000256_190 Hb_006916_040--Hb_001051_080 Hb_000076_160 Hb_000076_160 Hb_006916_040--Hb_000076_160 Hb_006916_040--Hb_033834_030 Hb_010712_030 Hb_010712_030 Hb_004310_020--Hb_010712_030 Hb_000205_300 Hb_000205_300 Hb_004310_020--Hb_000205_300 Hb_158062_010 Hb_158062_010 Hb_004310_020--Hb_158062_010 Hb_001135_130 Hb_001135_130 Hb_004310_020--Hb_001135_130 Hb_004310_020--Hb_001051_080 Hb_004310_020--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
58.5532 44.1909 45.601 67.5523 48.0899 50.7829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0367 43.652 30.1927 23.7905 14.7529

CAGE analysis