Hb_002235_230

Information

Type -
Description -
Location Contig2235: 161978-162977
Sequence    

Annotation

kegg
ID rcu:RCOM_0537780
description hypothetical protein
nr
ID AAP46157.1
description latex abundant protein 1 [Hevea brasiliensis]
swissprot
ID Q9FKA5
description Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1
trembl
ID Q6XNP6
description Latex abundant protein 1 OS=Hevea brasiliensis GN=LAP1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23223: 161923-163067
cDNA
(Sanger)
(ID:Location)		 001_B06.ab1: 161990-163021 , 002_B05.ab1: 161997-163021 , 002_F07.ab1: 162000-163020 , 003_B24.ab1: 161994-163031 , 004_F03.ab1: 161995-163050 , 005_K02.ab1: 161997-162901 , 005_L19.ab1: 161997-163037 , 006_L17.ab1: 161997-163022 , 006_N02.ab1: 161997-163021 , 006_N19.ab1: 161997-163029 , 007_C02.ab1: 162007-163030 , 007_J06.ab1: 161997-163022 , 007_L06.ab1: 161997-163046 , 008_A19.ab1: 161997-163004 , 008_B11.ab1: 161995-163024 , 008_C21.ab1: 161997-162987 , 008_N01.ab1: 161997-163052 , 009_A08.ab1: 161997-163021 , 009_E09.ab1: 162013-162842 , 009_O03.ab1: 161997-163053 , 009_P17.ab1: 162280-163024 , 010_L08.ab1: 162003-162944 , 010_O17.ab1: 161997-163021 , 010_P08.ab1: 161994-163031 , 011_A24.ab1: 161997-163019 , 011_I08.ab1: 161997-162899 , 011_O06.ab1: 161997-163065 , 012_H10.ab1: 161993-163020 , 012_K08.ab1: 161994-163040 , 012_M11.ab1: 161997-163020 , 012_N24.ab1: 161997-163053 , 014_I02.ab1: 161997-163020 , 015_K13.ab1: 161991-162845 , 016_A09.ab1: 162002-162922 , 016_A14.ab1: 161997-162905 , 016_I10.ab1: 161997-163020 , 016_J15.ab1: 161994-163021 , 016_L07.ab1: 161997-163021 , 016_O15.ab1: 161997-163041 , 017_L14.ab1: 161997-163021 , 017_L18.ab1: 161997-163021 , 017_M11.ab1: 161994-163052 , 018_A15.ab1: 161997-162902 , 018_H03.ab1: 162000-162902 , 020_E22.ab1: 161993-163022 , 020_H24.ab1: 161994-163023 , 021_B23.ab1: 162068-163037 , 021_C22.ab1: 161997-163020 , 021_L05.ab1: 161997-163020 , 021_M14.ab1: 161995-163024 , 021_M22.ab1: 161994-163022 , 021_O02.ab1: 161995-163020 , 022_I20.ab1: 161997-163021 , 022_J06.ab1: 162007-163030 , 022_O11.ab1: 161997-163037 , 022_O12.ab1: 161997-162899 , 023_D05.ab1: 161995-163063 , 023_G09.ab1: 161995-162811 , 023_H11.ab1: 161997-163053 , 023_I17.ab1: 162000-163024 , 023_J04.ab1: 161997-163021 , 023_M24.ab1: 161997-162899 , 023_O05.ab1: 161994-163052 , 024_B20.ab1: 161995-162990 , 024_E01.ab1: 161997-162914 , 024_I03.ab1: 162000-162934 , 025_A19.ab1: 162000-163024 , 025_J14.ab1: 162007-163030 , 025_P18.ab1: 162000-163020 , 026_K05.ab1: 161985-163020 , 026_O01.ab1: 161985-163022 , 026_P18.ab1: 161996-162941 , 027_C05.ab1: 161997-163020 , 027_L01.ab1: 161997-163054 , 028_N04.ab1: 161997-163020 , 029_C20.ab1: 161998-162920 , 029_F21.ab1: 161997-163020 , 029_K06.ab1: 161997-163020 , 029_O09.ab1: 161994-163051 , 029_O16.ab1: 161994-163031 , 030_K11.ab1: 161997-163037 , 030_L24.ab1: 162004-163037 , 030_N01.ab1: 161985-163022 , 031_C09.ab1: 161994-163038 , 032_F02.ab1: 162007-163030 , 033_K14.ab1: 161995-162991 , 033_K17.ab1: 161997-163021 , 033_M12.ab1: 162000-163013 , 033_O10.ab1: 161994-162942 , 034_A19.ab1: 161994-163022 , 034_D10.ab1: 161995-163025 , 034_I05.ab1: 161994-163022 , 034_I14.ab1: 161997-163021 , 034_J02.ab1: 161997-163022 , 034_K08.ab1: 161997-163022 , 034_K10.ab1: 162911-163030 , 034_N17.ab1: 162000-163020 , 035_B07.ab1: 161994-163024 , 035_G08.ab1: 161997-163046 , 035_L04.ab1: 161994-163031 , 035_O06.ab1: 162000-163020 , 035_P07.ab1: 162000-163020 , 036_M06.ab1: 161997-163020 , 036_P18.ab1: 161994-163031 , 037_G11.ab1: 162007-163030 , 038_M09.ab1: 161994-163021 , 040_A23.ab1: 162000-163009 , 040_B03.ab1: 161993-163022 , 040_G12.ab1: 161993-163022 , 040_P07.ab1: 161997-163022 , 041_H18.ab1: 161994-163027 , 041_N20.ab1: 161997-163024 , 042_A05.ab1: 161997-163056 , 042_F13.ab1: 161993-163052 , 043_G12.ab1: 161925-163024 , 043_H12.ab1: 161997-163024 , 043_K11.ab1: 161997-163021 , 043_O06.ab1: 161994-163037 , 043_O13.ab1: 161997-163022 , 044_D07.ab1: 161997-163022 , 044_I14.ab1: 161994-163024 , 045_B19.ab1: 161994-163021 , 045_H10.ab1: 161990-163022 , 045_K08.ab1: 161994-163037 , 045_N04.ab1: 161997-163030 , 046_D06.ab1: 162000-163020 , 046_E05.ab1: 161997-163022 , 046_G08.ab1: 161997-163020 , 047_C15.ab1: 161997-163042 , 047_K23.ab1: 161994-163024 , 048_E13.ab1: 161997-163029 , 048_K13.ab1: 161994-163031 , 049_B17.ab1: 162007-162811 , 049_E21.ab1: 162000-163020 , 050_P20.ab1: 161998-163027 , 051_A23.ab1: 161995-163024 , 051_P21.ab1: 161997-162901 , 052_H17.ab1: 161997-163021 , 052_N11.ab1: 161997-163019 , 052_P10.ab1: 161997-163020 , 053_K22.ab1: 161997-163042

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_230 0.0 - - latex abundant protein 1 [Hevea brasiliensis]
2 Hb_006816_440 0.0733539238 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_003540_230 0.0895140779 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
4 Hb_149683_010 0.09683686 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
5 Hb_002000_110 0.1046507802 - - ASR-like protein 2 [Hevea brasiliensis]
6 Hb_001741_090 0.1191780345 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
7 Hb_001741_080 0.1213656814 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
8 Hb_000603_210 0.1228898203 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
9 Hb_000300_400 0.122996019 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
10 Hb_000444_030 0.1259888953 - - PREDICTED: expansin-A20 [Jatropha curcas]
11 Hb_000041_070 0.127100444 - - hypothetical protein POPTR_0001s34870g [Populus trichocarpa]
12 Hb_001514_180 0.1283053889 transcription factor TF Family: M-type hypothetical protein JCGZ_16067 [Jatropha curcas]
13 Hb_060668_010 0.1284707571 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
14 Hb_000184_180 0.1304116856 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
15 Hb_004206_030 0.1322100853 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
16 Hb_000206_220 0.1368108967 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
17 Hb_000107_070 0.1373503534 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
18 Hb_000178_110 0.13829473 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005016_130 0.139822732 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
20 Hb_003038_180 0.1413242335 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_230 Hb_002235_230 Hb_006816_440 Hb_006816_440 Hb_002235_230--Hb_006816_440 Hb_003540_230 Hb_003540_230 Hb_002235_230--Hb_003540_230 Hb_149683_010 Hb_149683_010 Hb_002235_230--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_002235_230--Hb_002000_110 Hb_001741_090 Hb_001741_090 Hb_002235_230--Hb_001741_090 Hb_001741_080 Hb_001741_080 Hb_002235_230--Hb_001741_080 Hb_006816_440--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_006816_440--Hb_000184_180 Hb_000444_030 Hb_000444_030 Hb_006816_440--Hb_000444_030 Hb_006816_440--Hb_001741_080 Hb_000052_010 Hb_000052_010 Hb_006816_440--Hb_000052_010 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_005016_130 Hb_005016_130 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_149683_010--Hb_000184_180 Hb_149683_010--Hb_000052_010 Hb_103752_010 Hb_103752_010 Hb_149683_010--Hb_103752_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_075449_050 Hb_075449_050 Hb_002000_110--Hb_075449_050 Hb_004206_030 Hb_004206_030 Hb_002000_110--Hb_004206_030 Hb_000107_070 Hb_000107_070 Hb_002000_110--Hb_000107_070 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410 Hb_148121_010 Hb_148121_010 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_001741_090--Hb_000107_070 Hb_001741_090--Hb_149683_010 Hb_001741_090--Hb_002000_110 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_001741_080--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_000078_030 Hb_000078_030 Hb_001741_080--Hb_000078_030 Hb_001741_080--Hb_000444_030 Hb_001741_080--Hb_012799_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23167.9 282.185 40.53 1418.12 10618.7 14123.9
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65203.7 27938.3 29586.5 1993.35 107.666

CAGE analysis