Hb_002235_250

Information

Type -
Description -
Location Contig2235: 171567-176453
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12240g
description POPTRDRAFT_835709; cystathionine gamma synthase family protein
nr
ID XP_012084732.1
description PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
swissprot
ID P55217
description Cystathionine gamma-synthase 1, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=1 SV=3
trembl
ID A0A067JTE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19871 PE=3 SV=1
Gene Ontology
ID GO:0009570
description cystathionine gamma synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23224: 171398-176172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_250 0.0 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
2 Hb_005496_140 0.055299119 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000331_260 0.0636236796 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_001971_010 0.064223752 - - F23N19.4 [Arabidopsis thaliana]
5 Hb_000883_020 0.0670864216 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_000866_010 0.0687123013 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000375_350 0.0701782285 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
8 Hb_001252_130 0.0704193238 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
9 Hb_007389_010 0.0712536749 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
10 Hb_001142_030 0.0716139156 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
11 Hb_000866_260 0.0722163822 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
12 Hb_002013_020 0.0725980959 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
13 Hb_002600_090 0.0726436435 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001357_350 0.0727044696 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002863_050 0.0728983418 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_000416_040 0.0737006444 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
17 Hb_001902_030 0.0744516584 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
18 Hb_019280_030 0.0753345072 - - -
19 Hb_006455_120 0.0760375207 - - n6-DNA-methyltransferase, putative [Ricinus communis]
20 Hb_000329_320 0.0765077838 - - PREDICTED: DNA ligase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_250 Hb_002235_250 Hb_005496_140 Hb_005496_140 Hb_002235_250--Hb_005496_140 Hb_000331_260 Hb_000331_260 Hb_002235_250--Hb_000331_260 Hb_001971_010 Hb_001971_010 Hb_002235_250--Hb_001971_010 Hb_000883_020 Hb_000883_020 Hb_002235_250--Hb_000883_020 Hb_000866_010 Hb_000866_010 Hb_002235_250--Hb_000866_010 Hb_000375_350 Hb_000375_350 Hb_002235_250--Hb_000375_350 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_156279_020 Hb_156279_020 Hb_000331_260--Hb_156279_020 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_005269_070 Hb_005269_070 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_001971_010--Hb_001252_130 Hb_001971_010--Hb_000331_260 Hb_002600_090 Hb_002600_090 Hb_001971_010--Hb_002600_090 Hb_006478_020 Hb_006478_020 Hb_001971_010--Hb_006478_020 Hb_000172_290 Hb_000172_290 Hb_001971_010--Hb_000172_290 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_006817_010 Hb_006817_010 Hb_000866_010--Hb_006817_010 Hb_000053_110 Hb_000053_110 Hb_000866_010--Hb_000053_110 Hb_009421_020 Hb_009421_020 Hb_000866_010--Hb_009421_020 Hb_007389_010 Hb_007389_010 Hb_000866_010--Hb_007389_010 Hb_000260_100 Hb_000260_100 Hb_000866_010--Hb_000260_100 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.5997 38.4927 69.2859 65.1748 59.2321 75.8016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.4661 82.7804 76.199 39.3 68.8475

CAGE analysis