Hb_002235_270

Information

Type transcription factor
Description TF Family: NAC
Location Contig2235: 220378-221756
Sequence    

Annotation

kegg
ID vvi:100250998
description NAC domain-containing protein 100
nr
ID XP_012084730.1
description PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID R4N5I4
description NAC transcription factor 001 OS=Jatropha curcas GN=JCGZ_19869 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23229: 220258-221752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_270 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
2 Hb_065841_010 0.1912241357 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
3 Hb_001001_050 0.1975600157 - - CXE protein [Hevea brasiliensis]
4 Hb_009102_020 0.2162399897 - - hypothetical protein EUGRSUZ_I01262 [Eucalyptus grandis]
5 Hb_000311_030 0.2241691673 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
6 Hb_068569_010 0.2271731157 - - -
7 Hb_000979_010 0.2332052102 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
8 Hb_013358_100 0.2487669171 - - unknown [Medicago truncatula]
9 Hb_000424_080 0.2512905386 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
10 Hb_007749_010 0.2537086485 - - -
11 Hb_054541_010 0.2557126635 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
12 Hb_177152_010 0.2563981888 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
13 Hb_007157_060 0.2639290651 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
14 Hb_000359_300 0.2666456521 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
15 Hb_000033_070 0.2682624839 - - unnamed protein product [Oryza sativa Japonica Group]
16 Hb_000258_360 0.2736005733 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
17 Hb_000668_090 0.2773374162 - - senescence-associated family protein [Populus trichocarpa]
18 Hb_035436_010 0.278241127 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
19 Hb_001367_010 0.2796051447 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_000139_110 0.280120815 - - PREDICTED: mavicyanin [Jatropha curcas]

Gene co-expression network

sample Hb_002235_270 Hb_002235_270 Hb_065841_010 Hb_065841_010 Hb_002235_270--Hb_065841_010 Hb_001001_050 Hb_001001_050 Hb_002235_270--Hb_001001_050 Hb_009102_020 Hb_009102_020 Hb_002235_270--Hb_009102_020 Hb_000311_030 Hb_000311_030 Hb_002235_270--Hb_000311_030 Hb_068569_010 Hb_068569_010 Hb_002235_270--Hb_068569_010 Hb_000979_010 Hb_000979_010 Hb_002235_270--Hb_000979_010 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_013358_100 Hb_013358_100 Hb_065841_010--Hb_013358_100 Hb_008054_050 Hb_008054_050 Hb_065841_010--Hb_008054_050 Hb_065841_010--Hb_068569_010 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_000424_080 Hb_000424_080 Hb_001001_050--Hb_000424_080 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_000377_140 Hb_000377_140 Hb_009102_020--Hb_000377_140 Hb_000438_150 Hb_000438_150 Hb_009102_020--Hb_000438_150 Hb_144547_010 Hb_144547_010 Hb_009102_020--Hb_144547_010 Hb_003906_030 Hb_003906_030 Hb_009102_020--Hb_003906_030 Hb_035761_010 Hb_035761_010 Hb_009102_020--Hb_035761_010 Hb_000311_030--Hb_161994_040 Hb_006642_030 Hb_006642_030 Hb_000311_030--Hb_006642_030 Hb_000311_030--Hb_008054_050 Hb_000311_030--Hb_065841_010 Hb_000311_030--Hb_068569_010 Hb_000311_030--Hb_013358_100 Hb_068569_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_068569_010--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_068569_010--Hb_178620_010 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_001367_010 Hb_001367_010 Hb_000979_010--Hb_001367_010 Hb_005618_060 Hb_005618_060 Hb_000979_010--Hb_005618_060 Hb_002570_010 Hb_002570_010 Hb_000979_010--Hb_002570_010 Hb_091761_010 Hb_091761_010 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.64963 2.55318 1.2128 16.5826 1.77549 5.69763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.211939 0.066684 0.123813 0.253949 0.757449

CAGE analysis