Hb_002235_350

Information

Type -
Description -
Location Contig2235: 304550-307901
Sequence    

Annotation

kegg
ID rcu:RCOM_0340100
description lipoate-protein ligase, putative
nr
ID XP_012074458.1
description PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
swissprot
ID P47512
description Probable lipoate-protein ligase A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=lplA PE=3 SV=1
trembl
ID A0A067KUU1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10016 PE=4 SV=1
Gene Ontology
ID GO:0005737
description lipoate-protein ligase a isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23255: 304664-306688 , PASA_asmbl_23256: 306743-307689
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_350 0.0 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
2 Hb_001780_040 0.0645674849 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
3 Hb_003540_240 0.0746756682 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
4 Hb_000574_160 0.0752600715 - - PREDICTED: arogenate dehydrogenase 2, chloroplastic [Jatropha curcas]
5 Hb_000906_040 0.0784350856 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
6 Hb_001979_040 0.0803041912 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
7 Hb_001484_070 0.080505157 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002768_030 0.0806656809 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
9 Hb_000127_180 0.0823708057 - - 40S ribosomal protein S18, putative [Ricinus communis]
10 Hb_007416_030 0.0894459089 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
11 Hb_000169_040 0.0895119381 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
12 Hb_002056_050 0.0908096558 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
13 Hb_000920_110 0.0916068253 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
14 Hb_028486_030 0.0926519853 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
15 Hb_001047_230 0.0938282746 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000029_200 0.0953104399 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
17 Hb_001504_110 0.0961758416 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
18 Hb_002259_070 0.096365937 - - taz protein, putative [Ricinus communis]
19 Hb_005511_160 0.096451004 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
20 Hb_000035_370 0.0968110432 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002235_350 Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_002235_350--Hb_001780_040 Hb_003540_240 Hb_003540_240 Hb_002235_350--Hb_003540_240 Hb_000574_160 Hb_000574_160 Hb_002235_350--Hb_000574_160 Hb_000906_040 Hb_000906_040 Hb_002235_350--Hb_000906_040 Hb_001979_040 Hb_001979_040 Hb_002235_350--Hb_001979_040 Hb_001484_070 Hb_001484_070 Hb_002235_350--Hb_001484_070 Hb_002768_030 Hb_002768_030 Hb_001780_040--Hb_002768_030 Hb_003683_110 Hb_003683_110 Hb_001780_040--Hb_003683_110 Hb_000025_620 Hb_000025_620 Hb_001780_040--Hb_000025_620 Hb_000127_180 Hb_000127_180 Hb_001780_040--Hb_000127_180 Hb_003226_100 Hb_003226_100 Hb_001780_040--Hb_003226_100 Hb_002056_050 Hb_002056_050 Hb_003540_240--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_004127_020 Hb_004127_020 Hb_003540_240--Hb_004127_020 Hb_000169_040 Hb_000169_040 Hb_003540_240--Hb_000169_040 Hb_002798_020 Hb_002798_020 Hb_003540_240--Hb_002798_020 Hb_000574_160--Hb_000906_040 Hb_002259_070 Hb_002259_070 Hb_000574_160--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_000574_160--Hb_019253_030 Hb_000029_200 Hb_000029_200 Hb_000574_160--Hb_000029_200 Hb_000574_160--Hb_001780_040 Hb_000975_320 Hb_000975_320 Hb_000906_040--Hb_000975_320 Hb_000906_040--Hb_001780_040 Hb_000906_040--Hb_002768_030 Hb_012368_020 Hb_012368_020 Hb_000906_040--Hb_012368_020 Hb_001979_040--Hb_001484_070 Hb_005511_160 Hb_005511_160 Hb_001979_040--Hb_005511_160 Hb_000920_110 Hb_000920_110 Hb_001979_040--Hb_000920_110 Hb_001979_040--Hb_001780_040 Hb_000731_190 Hb_000731_190 Hb_001979_040--Hb_000731_190 Hb_001484_070--Hb_000920_110 Hb_000453_120 Hb_000453_120 Hb_001484_070--Hb_000453_120 Hb_000261_140 Hb_000261_140 Hb_001484_070--Hb_000261_140 Hb_001085_120 Hb_001085_120 Hb_001484_070--Hb_001085_120 Hb_001484_070--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.75333 2.24293 4.14988 2.09925 3.06008 4.36023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.39078 13.9811 5.94043 2.79961 3.87625

CAGE analysis