Hb_002235_360

Information

Type -
Description -
Location Contig2235: 308728-310845
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12110g
description POPTRDRAFT_908303; hypothetical protein
nr
ID XP_012078025.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
swissprot
ID Q9FK93
description Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=1 SV=1
trembl
ID A0A067KMH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13045 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at5g39680

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23257: 308758-308981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_360 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
2 Hb_008528_010 0.09462447 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
3 Hb_006740_020 0.0947805842 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
4 Hb_001431_070 0.102729186 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
5 Hb_113216_010 0.1037521689 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
6 Hb_006173_020 0.1056096976 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
7 Hb_001582_030 0.1061097904 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
8 Hb_009615_110 0.106804115 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
9 Hb_000732_020 0.1076365124 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
10 Hb_000453_270 0.1088573823 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
11 Hb_012016_020 0.1096684888 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
12 Hb_022288_010 0.1116681121 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
13 Hb_000320_440 0.1124039365 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
14 Hb_000212_280 0.1132928463 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
15 Hb_004032_350 0.114521821 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
16 Hb_000805_310 0.1159484344 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
17 Hb_011496_010 0.1169913485 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
18 Hb_002955_010 0.1173129629 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
19 Hb_000016_110 0.1197547379 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
20 Hb_000001_180 0.1211527634 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_360 Hb_002235_360 Hb_008528_010 Hb_008528_010 Hb_002235_360--Hb_008528_010 Hb_006740_020 Hb_006740_020 Hb_002235_360--Hb_006740_020 Hb_001431_070 Hb_001431_070 Hb_002235_360--Hb_001431_070 Hb_113216_010 Hb_113216_010 Hb_002235_360--Hb_113216_010 Hb_006173_020 Hb_006173_020 Hb_002235_360--Hb_006173_020 Hb_001582_030 Hb_001582_030 Hb_002235_360--Hb_001582_030 Hb_000134_360 Hb_000134_360 Hb_008528_010--Hb_000134_360 Hb_000003_790 Hb_000003_790 Hb_008528_010--Hb_000003_790 Hb_001486_120 Hb_001486_120 Hb_008528_010--Hb_001486_120 Hb_008528_010--Hb_001582_030 Hb_022288_010 Hb_022288_010 Hb_008528_010--Hb_022288_010 Hb_012016_020 Hb_012016_020 Hb_008528_010--Hb_012016_020 Hb_003638_140 Hb_003638_140 Hb_006740_020--Hb_003638_140 Hb_005016_030 Hb_005016_030 Hb_006740_020--Hb_005016_030 Hb_000270_450 Hb_000270_450 Hb_006740_020--Hb_000270_450 Hb_000732_020 Hb_000732_020 Hb_006740_020--Hb_000732_020 Hb_030312_040 Hb_030312_040 Hb_006740_020--Hb_030312_040 Hb_000413_130 Hb_000413_130 Hb_001431_070--Hb_000413_130 Hb_002725_070 Hb_002725_070 Hb_001431_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_001431_070--Hb_005295_040 Hb_117950_020 Hb_117950_020 Hb_001431_070--Hb_117950_020 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_000367_290 Hb_000367_290 Hb_001431_070--Hb_000367_290 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_000016_180 Hb_000016_180 Hb_113216_010--Hb_000016_180 Hb_002837_070 Hb_002837_070 Hb_113216_010--Hb_002837_070 Hb_000185_090 Hb_000185_090 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_001016_060 Hb_001016_060 Hb_006173_020--Hb_001016_060 Hb_006173_020--Hb_005016_030 Hb_009615_110 Hb_009615_110 Hb_006173_020--Hb_009615_110 Hb_019871_020 Hb_019871_020 Hb_006173_020--Hb_019871_020 Hb_000320_440 Hb_000320_440 Hb_006173_020--Hb_000320_440 Hb_006173_020--Hb_000270_450 Hb_005000_270 Hb_005000_270 Hb_001582_030--Hb_005000_270 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_001582_030--Hb_019871_020 Hb_001582_030--Hb_000732_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.42487 3.78579 0.440672 0.647204 8.82265 14.3064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55413 3.08339 3.41853 1.25257 1.12899

CAGE analysis