Hb_002235_370

Information

Type -
Description -
Location Contig2235: 311310-311918
Sequence    

Annotation

kegg
ID rcu:RCOM_0340110
description calcium ion binding protein, putative
nr
ID XP_012084717.1
description PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
swissprot
ID Q93Z27
description Probable calcium-binding protein CML45 OS=Arabidopsis thaliana GN=CML45 PE=1 SV=1
trembl
ID A0A067JTD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19861 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_370 0.0 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
2 Hb_010315_100 0.1267053001 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
3 Hb_004678_030 0.1313625147 - - fructokinase [Manihot esculenta]
4 Hb_164926_050 0.1344291574 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
5 Hb_002686_210 0.1368860657 - - zinc finger protein, putative [Ricinus communis]
6 Hb_003529_240 0.1386854908 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
7 Hb_002539_050 0.1391979192 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
8 Hb_000210_160 0.1397394003 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_000654_050 0.1400874689 - - hypothetical protein POPTR_0005s07810g [Populus trichocarpa]
10 Hb_148346_010 0.1432029057 - - -
11 Hb_002324_040 0.1436353477 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
12 Hb_000069_430 0.1439129148 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
13 Hb_001776_100 0.1457266036 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
14 Hb_005245_140 0.1458729387 - - PREDICTED: ribonuclease 2 [Jatropha curcas]
15 Hb_001675_310 0.1459382736 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
16 Hb_002510_100 0.1462095134 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_006528_020 0.1496264003 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012308_050 0.1525388685 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
19 Hb_005000_050 0.1525768195 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
20 Hb_003025_150 0.153462019 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002235_370 Hb_002235_370 Hb_010315_100 Hb_010315_100 Hb_002235_370--Hb_010315_100 Hb_004678_030 Hb_004678_030 Hb_002235_370--Hb_004678_030 Hb_164926_050 Hb_164926_050 Hb_002235_370--Hb_164926_050 Hb_002686_210 Hb_002686_210 Hb_002235_370--Hb_002686_210 Hb_003529_240 Hb_003529_240 Hb_002235_370--Hb_003529_240 Hb_002539_050 Hb_002539_050 Hb_002235_370--Hb_002539_050 Hb_000363_180 Hb_000363_180 Hb_010315_100--Hb_000363_180 Hb_010315_100--Hb_002539_050 Hb_003849_120 Hb_003849_120 Hb_010315_100--Hb_003849_120 Hb_186247_010 Hb_186247_010 Hb_010315_100--Hb_186247_010 Hb_000196_010 Hb_000196_010 Hb_010315_100--Hb_000196_010 Hb_000654_050 Hb_000654_050 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140 Hb_033053_010 Hb_033053_010 Hb_164926_050--Hb_033053_010 Hb_000069_430 Hb_000069_430 Hb_164926_050--Hb_000069_430 Hb_002078_250 Hb_002078_250 Hb_164926_050--Hb_002078_250 Hb_007574_050 Hb_007574_050 Hb_164926_050--Hb_007574_050 Hb_005000_050 Hb_005000_050 Hb_164926_050--Hb_005000_050 Hb_000230_470 Hb_000230_470 Hb_002686_210--Hb_000230_470 Hb_000100_210 Hb_000100_210 Hb_002686_210--Hb_000100_210 Hb_005408_100 Hb_005408_100 Hb_002686_210--Hb_005408_100 Hb_001522_040 Hb_001522_040 Hb_002686_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_002686_210--Hb_029748_020 Hb_002686_210--Hb_000196_010 Hb_033053_020 Hb_033053_020 Hb_003529_240--Hb_033053_020 Hb_007749_020 Hb_007749_020 Hb_003529_240--Hb_007749_020 Hb_000563_630 Hb_000563_630 Hb_003529_240--Hb_000563_630 Hb_001675_310 Hb_001675_310 Hb_003529_240--Hb_001675_310 Hb_004659_100 Hb_004659_100 Hb_003529_240--Hb_004659_100 Hb_002539_050--Hb_186247_010 Hb_003929_190 Hb_003929_190 Hb_002539_050--Hb_003929_190 Hb_002539_050--Hb_000363_180 Hb_148346_010 Hb_148346_010 Hb_002539_050--Hb_148346_010 Hb_004631_170 Hb_004631_170 Hb_002539_050--Hb_004631_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.332171 4.45711 3.44836 5.83116 0.379779 0.300925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.395085 0.232884 0 2.00384 1.95758

CAGE analysis