Hb_002235_380

Information

Type -
Description -
Location Contig2235: 315368-316055
Sequence    

Annotation

kegg
ID rcu:RCOM_0340120
description hypothetical protein
nr
ID KDP27161.1
description hypothetical protein JCGZ_19860 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JT72
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23258: 315357-315983 , PASA_asmbl_23259: 315358-315986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_380 0.0 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
2 Hb_000563_440 0.1321746433 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
3 Hb_002540_070 0.136927572 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
4 Hb_000684_120 0.1551670646 - - PREDICTED: uncharacterized protein LOC105642190 isoform X2 [Jatropha curcas]
5 Hb_002960_090 0.1562312789 - - protein with unknown function [Ricinus communis]
6 Hb_001863_160 0.1587001926 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_001155_050 0.1616120742 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
8 Hb_101146_010 0.1624268168 - - PREDICTED: peregrin-like [Jatropha curcas]
9 Hb_002400_050 0.1661179975 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
10 Hb_000046_310 0.1685341291 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
11 Hb_000098_150 0.1687096589 - - DNA helicase hus2, putative [Ricinus communis]
12 Hb_000959_190 0.1689096095 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
13 Hb_010534_020 0.1717333021 - - PREDICTED: protein XRI1 isoform X1 [Jatropha curcas]
14 Hb_002307_020 0.1726789315 - - PREDICTED: histone H1-like [Jatropha curcas]
15 Hb_030627_070 0.1772203476 - - histone H4 [Zea mays]
16 Hb_000818_120 0.1778771917 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000890_020 0.1781975788 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
18 Hb_005701_110 0.1799301941 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
19 Hb_004116_120 0.1800352943 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
20 Hb_015778_040 0.1806821632 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_380 Hb_002235_380 Hb_000563_440 Hb_000563_440 Hb_002235_380--Hb_000563_440 Hb_002540_070 Hb_002540_070 Hb_002235_380--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_002235_380--Hb_000684_120 Hb_002960_090 Hb_002960_090 Hb_002235_380--Hb_002960_090 Hb_001863_160 Hb_001863_160 Hb_002235_380--Hb_001863_160 Hb_001155_050 Hb_001155_050 Hb_002235_380--Hb_001155_050 Hb_000563_440--Hb_002540_070 Hb_000563_440--Hb_000684_120 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_000563_440--Hb_001863_160 Hb_007123_080 Hb_007123_080 Hb_002540_070--Hb_007123_080 Hb_000890_020 Hb_000890_020 Hb_002540_070--Hb_000890_020 Hb_000181_270 Hb_000181_270 Hb_002540_070--Hb_000181_270 Hb_002400_050 Hb_002400_050 Hb_002540_070--Hb_002400_050 Hb_030627_070 Hb_030627_070 Hb_000684_120--Hb_030627_070 Hb_000684_120--Hb_005271_140 Hb_001232_090 Hb_001232_090 Hb_000684_120--Hb_001232_090 Hb_124677_030 Hb_124677_030 Hb_000684_120--Hb_124677_030 Hb_004449_040 Hb_004449_040 Hb_000684_120--Hb_004449_040 Hb_015778_040 Hb_015778_040 Hb_002960_090--Hb_015778_040 Hb_101146_010 Hb_101146_010 Hb_002960_090--Hb_101146_010 Hb_000984_260 Hb_000984_260 Hb_002960_090--Hb_000984_260 Hb_002627_020 Hb_002627_020 Hb_002960_090--Hb_002627_020 Hb_006210_020 Hb_006210_020 Hb_002960_090--Hb_006210_020 Hb_005701_110 Hb_005701_110 Hb_002960_090--Hb_005701_110 Hb_000098_150 Hb_000098_150 Hb_001863_160--Hb_000098_150 Hb_014231_020 Hb_014231_020 Hb_001863_160--Hb_014231_020 Hb_005144_210 Hb_005144_210 Hb_001863_160--Hb_005144_210 Hb_004712_190 Hb_004712_190 Hb_001863_160--Hb_004712_190 Hb_007741_130 Hb_007741_130 Hb_001863_160--Hb_007741_130 Hb_001191_080 Hb_001191_080 Hb_001863_160--Hb_001191_080 Hb_011671_340 Hb_011671_340 Hb_001155_050--Hb_011671_340 Hb_001155_050--Hb_015778_040 Hb_007426_220 Hb_007426_220 Hb_001155_050--Hb_007426_220 Hb_000818_120 Hb_000818_120 Hb_001155_050--Hb_000818_120 Hb_000589_170 Hb_000589_170 Hb_001155_050--Hb_000589_170 Hb_029253_010 Hb_029253_010 Hb_001155_050--Hb_029253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07878 7.39266 32.3044 14.223 1.27611 3.31219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12605 5.35941 1.78713 5.88659 3.0636

CAGE analysis