Hb_002235_390

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig2235: 318290-321590
Sequence    

Annotation

kegg
ID rcu:RCOM_0340230
description zinc finger protein, putative
nr
ID NP_001295631.1
description cyclic dof factor 2 [Jatropha curcas]
swissprot
ID Q93ZL5
description Cyclic dof factor 2 OS=Arabidopsis thaliana GN=CDF2 PE=1 SV=2
trembl
ID D8UXL4
description DNA binding with one finger 1 OS=Jatropha curcas GN=Dof1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description cyclic dof factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23260: 320721-321219 , PASA_asmbl_23261: 318168-321391 , PASA_asmbl_23262: 321404-321581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_390 0.0 transcription factor TF Family: C2C2-Dof cyclic dof factor 2 [Jatropha curcas]
2 Hb_000009_520 0.1130202812 - - PREDICTED: wall-associated receptor kinase-like 14 [Jatropha curcas]
3 Hb_000913_030 0.1237754646 - - nuclease, putative [Ricinus communis]
4 Hb_001633_090 0.1316101907 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
5 Hb_000742_010 0.1320026625 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
6 Hb_002203_030 0.1323493859 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
7 Hb_000330_060 0.1401355959 - - PREDICTED: adenosine kinase [Jatropha curcas]
8 Hb_001482_050 0.1405837702 - - COR413-PM2, putative [Ricinus communis]
9 Hb_005977_030 0.1409806342 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
10 Hb_004079_130 0.141679209 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
11 Hb_001140_090 0.1432922919 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001500_120 0.1439543923 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_004333_040 0.1444333367 - - PREDICTED: uncharacterized protein LOC105629988 [Jatropha curcas]
14 Hb_000402_150 0.1445820722 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
15 Hb_008114_040 0.1460229448 - - Fanconi anemia group D2 [Gossypium arboreum]
16 Hb_000116_030 0.147941452 - - PREDICTED: protein GRIP [Jatropha curcas]
17 Hb_029388_010 0.1479556439 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
18 Hb_001699_220 0.1491481884 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH121-like [Jatropha curcas]
19 Hb_002675_110 0.149905781 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
20 Hb_001241_010 0.1500505866 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002235_390 Hb_002235_390 Hb_000009_520 Hb_000009_520 Hb_002235_390--Hb_000009_520 Hb_000913_030 Hb_000913_030 Hb_002235_390--Hb_000913_030 Hb_001633_090 Hb_001633_090 Hb_002235_390--Hb_001633_090 Hb_000742_010 Hb_000742_010 Hb_002235_390--Hb_000742_010 Hb_002203_030 Hb_002203_030 Hb_002235_390--Hb_002203_030 Hb_000330_060 Hb_000330_060 Hb_002235_390--Hb_000330_060 Hb_000193_260 Hb_000193_260 Hb_000009_520--Hb_000193_260 Hb_002686_150 Hb_002686_150 Hb_000009_520--Hb_002686_150 Hb_026198_010 Hb_026198_010 Hb_000009_520--Hb_026198_010 Hb_005946_150 Hb_005946_150 Hb_000009_520--Hb_005946_150 Hb_000009_520--Hb_002203_030 Hb_001053_190 Hb_001053_190 Hb_000913_030--Hb_001053_190 Hb_002675_250 Hb_002675_250 Hb_000913_030--Hb_002675_250 Hb_000913_030--Hb_000742_010 Hb_000229_050 Hb_000229_050 Hb_000913_030--Hb_000229_050 Hb_000579_080 Hb_000579_080 Hb_000913_030--Hb_000579_080 Hb_005784_070 Hb_005784_070 Hb_000913_030--Hb_005784_070 Hb_053709_050 Hb_053709_050 Hb_001633_090--Hb_053709_050 Hb_004994_210 Hb_004994_210 Hb_001633_090--Hb_004994_210 Hb_007850_030 Hb_007850_030 Hb_001633_090--Hb_007850_030 Hb_007741_130 Hb_007741_130 Hb_001633_090--Hb_007741_130 Hb_002693_030 Hb_002693_030 Hb_001633_090--Hb_002693_030 Hb_001633_090--Hb_000742_010 Hb_000076_210 Hb_000076_210 Hb_000742_010--Hb_000076_210 Hb_000174_260 Hb_000174_260 Hb_000742_010--Hb_000174_260 Hb_006824_010 Hb_006824_010 Hb_000742_010--Hb_006824_010 Hb_005754_040 Hb_005754_040 Hb_000742_010--Hb_005754_040 Hb_000723_030 Hb_000723_030 Hb_002203_030--Hb_000723_030 Hb_000160_140 Hb_000160_140 Hb_002203_030--Hb_000160_140 Hb_004225_060 Hb_004225_060 Hb_002203_030--Hb_004225_060 Hb_000476_060 Hb_000476_060 Hb_002203_030--Hb_000476_060 Hb_000176_020 Hb_000176_020 Hb_002203_030--Hb_000176_020 Hb_000230_460 Hb_000230_460 Hb_002203_030--Hb_000230_460 Hb_000116_030 Hb_000116_030 Hb_000330_060--Hb_000116_030 Hb_016347_020 Hb_016347_020 Hb_000330_060--Hb_016347_020 Hb_000215_300 Hb_000215_300 Hb_000330_060--Hb_000215_300 Hb_001579_330 Hb_001579_330 Hb_000330_060--Hb_001579_330 Hb_002686_080 Hb_002686_080 Hb_000330_060--Hb_002686_080 Hb_000238_040 Hb_000238_040 Hb_000330_060--Hb_000238_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8351 27.0972 47.2688 28.738 5.19809 12.9303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.76 11.4674 14.1556 31.4392 15.9695

CAGE analysis