Hb_002236_010

Information

Type -
Description -
Location Contig2236: 35857-38470
Sequence    

Annotation

kegg
ID rcu:RCOM_1312250
description hypothetical protein
nr
ID XP_012086673.1
description PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
swissprot
ID Q8LBF7
description Bidirectional sugar transporter SWEET7 OS=Arabidopsis thaliana GN=SWEET7 PE=2 SV=1
trembl
ID A0A067JZ46
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20416 PE=4 SV=1
Gene Ontology
ID GO:0008643
description bidirectional sugar transporter sweet4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23264: 36122-37975
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002236_010 0.0 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]
2 Hb_002553_070 0.0623362777 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
3 Hb_000070_070 0.0748502376 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
4 Hb_005679_120 0.0797842968 - - hypothetical protein RCOM_0284080 [Ricinus communis]
5 Hb_023956_010 0.0870204267 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_000571_060 0.0914922077 - - PREDICTED: uncharacterized protein LOC105648112 [Jatropha curcas]
7 Hb_007625_030 0.0937707611 - - unknown [Medicago truncatula]
8 Hb_006153_130 0.1062688481 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_002811_110 0.110473249 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
10 Hb_000181_260 0.1112078544 - - PREDICTED: uncharacterized protein LOC105139156 [Populus euphratica]
11 Hb_010417_090 0.1149773865 - - PREDICTED: protein LURP-one-related 17 [Jatropha curcas]
12 Hb_012787_050 0.1158860516 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
13 Hb_003964_060 0.1204121675 - - PREDICTED: beta-glucosidase 40 [Jatropha curcas]
14 Hb_043789_010 0.121419467 transcription factor TF Family: AP2 hypothetical protein VITISV_034131 [Vitis vinifera]
15 Hb_009838_120 0.1231362438 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
16 Hb_000069_520 0.1235844232 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
17 Hb_000454_200 0.1242096677 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
18 Hb_003847_050 0.124640069 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
19 Hb_000856_250 0.1251910441 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_019026_050 0.1266122421 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002236_010 Hb_002236_010 Hb_002553_070 Hb_002553_070 Hb_002236_010--Hb_002553_070 Hb_000070_070 Hb_000070_070 Hb_002236_010--Hb_000070_070 Hb_005679_120 Hb_005679_120 Hb_002236_010--Hb_005679_120 Hb_023956_010 Hb_023956_010 Hb_002236_010--Hb_023956_010 Hb_000571_060 Hb_000571_060 Hb_002236_010--Hb_000571_060 Hb_007625_030 Hb_007625_030 Hb_002236_010--Hb_007625_030 Hb_002553_070--Hb_023956_010 Hb_002553_070--Hb_000571_060 Hb_019026_050 Hb_019026_050 Hb_002553_070--Hb_019026_050 Hb_002553_070--Hb_005679_120 Hb_006846_030 Hb_006846_030 Hb_002553_070--Hb_006846_030 Hb_012787_050 Hb_012787_050 Hb_000070_070--Hb_012787_050 Hb_000070_070--Hb_023956_010 Hb_010417_090 Hb_010417_090 Hb_000070_070--Hb_010417_090 Hb_003964_060 Hb_003964_060 Hb_000070_070--Hb_003964_060 Hb_000070_070--Hb_002553_070 Hb_000479_230 Hb_000479_230 Hb_005679_120--Hb_000479_230 Hb_009627_020 Hb_009627_020 Hb_005679_120--Hb_009627_020 Hb_000454_200 Hb_000454_200 Hb_005679_120--Hb_000454_200 Hb_005679_120--Hb_023956_010 Hb_003847_050 Hb_003847_050 Hb_023956_010--Hb_003847_050 Hb_023956_010--Hb_006846_030 Hb_023956_010--Hb_012787_050 Hb_023956_010--Hb_019026_050 Hb_002811_110 Hb_002811_110 Hb_000571_060--Hb_002811_110 Hb_000181_260 Hb_000181_260 Hb_000571_060--Hb_000181_260 Hb_007237_080 Hb_007237_080 Hb_000571_060--Hb_007237_080 Hb_008725_020 Hb_008725_020 Hb_000571_060--Hb_008725_020 Hb_007625_030--Hb_002553_070 Hb_007625_030--Hb_023956_010 Hb_007625_030--Hb_009627_020 Hb_004079_100 Hb_004079_100 Hb_007625_030--Hb_004079_100 Hb_007625_030--Hb_000454_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.5545 2.76877 10.3361 0 0.0235635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.95739 2.14123

CAGE analysis