Hb_002236_040

Information

Type -
Description -
Location Contig2236: 115967-119580
Sequence    

Annotation

kegg
ID rcu:RCOM_0618390
description Cytochrome c, putative
nr
ID XP_012066709.1
description PREDICTED: cytochrome c [Jatropha curcas]
swissprot
ID P00057
description Cytochrome c OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067L5F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00265 PE=3 SV=1
Gene Ontology
ID GO:0005758
description cytochrome c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23267: 117359-120527 , PASA_asmbl_23268: 118841-119236 , PASA_asmbl_23269: 117359-119633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002236_040 0.0 - - PREDICTED: cytochrome c [Jatropha curcas]
2 Hb_006698_030 0.1075049552 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
3 Hb_084481_010 0.1207696457 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
4 Hb_000015_030 0.1291327118 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
5 Hb_008173_110 0.1367154099 - - DNA binding protein, putative [Ricinus communis]
6 Hb_003098_020 0.1376634538 - - 40S ribosomal protein S5B [Hevea brasiliensis]
7 Hb_001322_040 0.1393832149 - - -
8 Hb_000210_120 0.1422407345 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
9 Hb_000504_070 0.1449363213 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
10 Hb_000136_350 0.147031831 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
11 Hb_016522_010 0.1473566289 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
12 Hb_000665_050 0.147682579 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
13 Hb_000896_040 0.1478016124 - - BnaC02g13240D [Brassica napus]
14 Hb_000175_540 0.1500099519 - - PREDICTED: uncharacterized protein LOC105634886 [Jatropha curcas]
15 Hb_186982_040 0.151894387 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
16 Hb_008695_050 0.1521655879 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000034_070 0.1550897038 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
18 Hb_006452_100 0.1554112231 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
19 Hb_000181_050 0.1557506625 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
20 Hb_001215_040 0.1565005392 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002236_040 Hb_002236_040 Hb_006698_030 Hb_006698_030 Hb_002236_040--Hb_006698_030 Hb_084481_010 Hb_084481_010 Hb_002236_040--Hb_084481_010 Hb_000015_030 Hb_000015_030 Hb_002236_040--Hb_000015_030 Hb_008173_110 Hb_008173_110 Hb_002236_040--Hb_008173_110 Hb_003098_020 Hb_003098_020 Hb_002236_040--Hb_003098_020 Hb_001322_040 Hb_001322_040 Hb_002236_040--Hb_001322_040 Hb_006698_030--Hb_003098_020 Hb_000103_270 Hb_000103_270 Hb_006698_030--Hb_000103_270 Hb_005914_010 Hb_005914_010 Hb_006698_030--Hb_005914_010 Hb_006698_030--Hb_000015_030 Hb_005305_150 Hb_005305_150 Hb_006698_030--Hb_005305_150 Hb_000496_120 Hb_000496_120 Hb_006698_030--Hb_000496_120 Hb_033501_010 Hb_033501_010 Hb_084481_010--Hb_033501_010 Hb_000175_540 Hb_000175_540 Hb_084481_010--Hb_000175_540 Hb_002889_030 Hb_002889_030 Hb_084481_010--Hb_002889_030 Hb_000504_070 Hb_000504_070 Hb_084481_010--Hb_000504_070 Hb_109002_020 Hb_109002_020 Hb_084481_010--Hb_109002_020 Hb_001623_060 Hb_001623_060 Hb_000015_030--Hb_001623_060 Hb_000015_030--Hb_005914_010 Hb_011671_440 Hb_011671_440 Hb_000015_030--Hb_011671_440 Hb_009687_010 Hb_009687_010 Hb_000015_030--Hb_009687_010 Hb_001332_040 Hb_001332_040 Hb_000015_030--Hb_001332_040 Hb_001653_020 Hb_001653_020 Hb_008173_110--Hb_001653_020 Hb_003994_260 Hb_003994_260 Hb_008173_110--Hb_003994_260 Hb_004453_050 Hb_004453_050 Hb_008173_110--Hb_004453_050 Hb_000069_420 Hb_000069_420 Hb_008173_110--Hb_000069_420 Hb_000210_120 Hb_000210_120 Hb_008173_110--Hb_000210_120 Hb_029584_050 Hb_029584_050 Hb_008173_110--Hb_029584_050 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_001215_040 Hb_001215_040 Hb_001322_040--Hb_001215_040 Hb_005365_030 Hb_005365_030 Hb_001322_040--Hb_005365_030 Hb_008226_060 Hb_008226_060 Hb_001322_040--Hb_008226_060 Hb_001057_040 Hb_001057_040 Hb_001322_040--Hb_001057_040 Hb_003389_040 Hb_003389_040 Hb_001322_040--Hb_003389_040 Hb_001133_120 Hb_001133_120 Hb_001322_040--Hb_001133_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94805 6.51721 8.50978 11.264 1.09367 13.1878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8746 19.8142 9.43575 21.8663 4.30234

CAGE analysis