Hb_002236_050

Information

Type -
Description -
Location Contig2236: 119989-120616
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID M0RH33
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23267: 117359-120527 , PASA_asmbl_23268: 118841-119236 , PASA_asmbl_23269: 117359-119633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002236_050 0.0 - - -
2 Hb_008948_120 0.1357494214 - - PREDICTED: heme oxygenase 1, chloroplastic-like [Jatropha curcas]
3 Hb_011861_120 0.154787621 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
4 Hb_000555_100 0.1607222176 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
5 Hb_000402_210 0.1613070065 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
6 Hb_006970_080 0.1637501627 - - PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
7 Hb_004064_010 0.1656840461 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
8 Hb_003038_140 0.1659096528 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
9 Hb_002374_380 0.1687431421 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
10 Hb_084481_010 0.1692345864 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
11 Hb_003266_100 0.1699801977 - - Isomerase protein [Gossypium arboreum]
12 Hb_082741_010 0.1704292356 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
13 Hb_002236_040 0.1705856525 - - PREDICTED: cytochrome c [Jatropha curcas]
14 Hb_006698_030 0.17072425 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
15 Hb_002027_140 0.1715255433 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
16 Hb_000796_250 0.1749383502 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
17 Hb_001726_110 0.1765100386 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
18 Hb_017491_020 0.1768888205 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
19 Hb_016522_010 0.1791248952 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
20 Hb_000347_450 0.1792500967 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002236_050 Hb_002236_050 Hb_008948_120 Hb_008948_120 Hb_002236_050--Hb_008948_120 Hb_011861_120 Hb_011861_120 Hb_002236_050--Hb_011861_120 Hb_000555_100 Hb_000555_100 Hb_002236_050--Hb_000555_100 Hb_000402_210 Hb_000402_210 Hb_002236_050--Hb_000402_210 Hb_006970_080 Hb_006970_080 Hb_002236_050--Hb_006970_080 Hb_004064_010 Hb_004064_010 Hb_002236_050--Hb_004064_010 Hb_017491_020 Hb_017491_020 Hb_008948_120--Hb_017491_020 Hb_000347_450 Hb_000347_450 Hb_008948_120--Hb_000347_450 Hb_002307_310 Hb_002307_310 Hb_008948_120--Hb_002307_310 Hb_168893_020 Hb_168893_020 Hb_008948_120--Hb_168893_020 Hb_000210_060 Hb_000210_060 Hb_008948_120--Hb_000210_060 Hb_008790_020 Hb_008790_020 Hb_011861_120--Hb_008790_020 Hb_025336_020 Hb_025336_020 Hb_011861_120--Hb_025336_020 Hb_001726_110 Hb_001726_110 Hb_011861_120--Hb_001726_110 Hb_049436_010 Hb_049436_010 Hb_011861_120--Hb_049436_010 Hb_000094_370 Hb_000094_370 Hb_011861_120--Hb_000094_370 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_001369_250 Hb_001369_250 Hb_000555_100--Hb_001369_250 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000555_100--Hb_003058_120 Hb_088753_010 Hb_088753_010 Hb_000402_210--Hb_088753_010 Hb_000302_260 Hb_000302_260 Hb_000402_210--Hb_000302_260 Hb_000451_070 Hb_000451_070 Hb_000402_210--Hb_000451_070 Hb_002042_130 Hb_002042_130 Hb_000402_210--Hb_002042_130 Hb_007382_120 Hb_007382_120 Hb_000402_210--Hb_007382_120 Hb_006538_080 Hb_006538_080 Hb_000402_210--Hb_006538_080 Hb_000331_180 Hb_000331_180 Hb_006970_080--Hb_000331_180 Hb_048937_060 Hb_048937_060 Hb_006970_080--Hb_048937_060 Hb_000525_020 Hb_000525_020 Hb_006970_080--Hb_000525_020 Hb_001369_300 Hb_001369_300 Hb_006970_080--Hb_001369_300 Hb_004734_040 Hb_004734_040 Hb_006970_080--Hb_004734_040 Hb_003266_100 Hb_003266_100 Hb_004064_010--Hb_003266_100 Hb_105602_010 Hb_105602_010 Hb_004064_010--Hb_105602_010 Hb_000621_020 Hb_000621_020 Hb_004064_010--Hb_000621_020 Hb_109002_020 Hb_109002_020 Hb_004064_010--Hb_109002_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95984 3.52046 2.5507 2.12879 0.589457 1.52699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08363 5.72979 1.32814 8.00654 1.0879

CAGE analysis