Hb_002236_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2236: 145590-146962
Sequence    

Annotation

kegg
ID rcu:RCOM_1174080
description DNA binding protein, putative
nr
ID XP_012088267.1
description PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
swissprot
ID Q9FLI1
description Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2 SV=1
trembl
ID A0A067JJH0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25773 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh36-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002236_070 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
2 Hb_000407_080 0.1273220323 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
3 Hb_006020_010 0.1316010843 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
4 Hb_004635_040 0.1346688974 - - Polyprotein, putative [Solanum demissum]
5 Hb_004452_080 0.1356289637 - - ring finger protein, putative [Ricinus communis]
6 Hb_001922_020 0.1459530073 - - conserved hypothetical protein [Ricinus communis]
7 Hb_013914_020 0.1459709072 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
8 Hb_002217_210 0.147974153 - - -
9 Hb_010614_020 0.1484836645 - - BnaC05g27570D [Brassica napus]
10 Hb_003556_060 0.1486621647 - - -
11 Hb_008215_010 0.1494409683 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000836_390 0.1512238354 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
13 Hb_001454_410 0.1515298893 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
14 Hb_008695_130 0.1532425214 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004129_110 0.1560076263 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
16 Hb_034342_010 0.1625244614 - - conserved hypothetical protein [Ricinus communis]
17 Hb_008948_060 0.1639794254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000586_100 0.1648138691 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008705_040 0.1659986979 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
20 Hb_022998_010 0.1679701766 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002236_070 Hb_002236_070 Hb_000407_080 Hb_000407_080 Hb_002236_070--Hb_000407_080 Hb_006020_010 Hb_006020_010 Hb_002236_070--Hb_006020_010 Hb_004635_040 Hb_004635_040 Hb_002236_070--Hb_004635_040 Hb_004452_080 Hb_004452_080 Hb_002236_070--Hb_004452_080 Hb_001922_020 Hb_001922_020 Hb_002236_070--Hb_001922_020 Hb_013914_020 Hb_013914_020 Hb_002236_070--Hb_013914_020 Hb_000407_080--Hb_013914_020 Hb_009581_050 Hb_009581_050 Hb_000407_080--Hb_009581_050 Hb_000586_100 Hb_000586_100 Hb_000407_080--Hb_000586_100 Hb_134017_010 Hb_134017_010 Hb_000407_080--Hb_134017_010 Hb_003439_090 Hb_003439_090 Hb_000407_080--Hb_003439_090 Hb_003807_020 Hb_003807_020 Hb_000407_080--Hb_003807_020 Hb_006020_010--Hb_000586_100 Hb_000907_120 Hb_000907_120 Hb_006020_010--Hb_000907_120 Hb_006020_010--Hb_003439_090 Hb_006020_010--Hb_000407_080 Hb_000152_250 Hb_000152_250 Hb_006020_010--Hb_000152_250 Hb_006364_020 Hb_006364_020 Hb_006020_010--Hb_006364_020 Hb_010614_020 Hb_010614_020 Hb_004635_040--Hb_010614_020 Hb_002217_210 Hb_002217_210 Hb_004635_040--Hb_002217_210 Hb_007403_010 Hb_007403_010 Hb_004635_040--Hb_007403_010 Hb_002044_110 Hb_002044_110 Hb_004635_040--Hb_002044_110 Hb_005144_100 Hb_005144_100 Hb_004635_040--Hb_005144_100 Hb_036356_010 Hb_036356_010 Hb_004635_040--Hb_036356_010 Hb_008705_040 Hb_008705_040 Hb_004452_080--Hb_008705_040 Hb_022998_010 Hb_022998_010 Hb_004452_080--Hb_022998_010 Hb_004021_100 Hb_004021_100 Hb_004452_080--Hb_004021_100 Hb_007432_050 Hb_007432_050 Hb_004452_080--Hb_007432_050 Hb_017491_040 Hb_017491_040 Hb_004452_080--Hb_017491_040 Hb_001922_020--Hb_002217_210 Hb_003768_110 Hb_003768_110 Hb_001922_020--Hb_003768_110 Hb_001922_020--Hb_004452_080 Hb_001922_020--Hb_002044_110 Hb_003413_020 Hb_003413_020 Hb_001922_020--Hb_003413_020 Hb_013914_020--Hb_000586_100 Hb_013914_020--Hb_003439_090 Hb_000045_180 Hb_000045_180 Hb_013914_020--Hb_000045_180 Hb_017866_020 Hb_017866_020 Hb_013914_020--Hb_017866_020 Hb_003052_120 Hb_003052_120 Hb_013914_020--Hb_003052_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 18.9909 6.39391 12.6177 0.0791766 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123502 0.291352 0.176715 20.4545 0.196207

CAGE analysis