Hb_002239_030

Information

Type transcription factor
Description TF Family: ARF
Location Contig2239: 47037-54554
Sequence    

Annotation

kegg
ID rcu:RCOM_1400470
description Auxin response factor, putative
nr
ID XP_012064855.1
description PREDICTED: auxin response factor 4 [Jatropha curcas]
swissprot
ID Q9ZTX9
description Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=1 SV=1
trembl
ID A0A067LHL5
description Auxin response factor OS=Jatropha curcas GN=JCGZ_05557 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23275: 47185-47388 , PASA_asmbl_23276: 47467-54627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_030 0.0 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
2 Hb_000101_140 0.0732055245 - - amino acid transporter, putative [Ricinus communis]
3 Hb_000723_060 0.0875798739 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
4 Hb_002248_090 0.0941256421 - - metallothionein 3-like protein [Hevea brasiliensis]
5 Hb_024857_010 0.0967266527 - - glutaredoxin 2.1 [Hevea brasiliensis]
6 Hb_000656_370 0.0984046682 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_060237_010 0.0987155257 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006615_180 0.0996738172 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
9 Hb_002968_010 0.1062021081 - - PREDICTED: pectinesterase [Jatropha curcas]
10 Hb_003602_090 0.1124514157 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
11 Hb_004122_020 0.1159836601 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
12 Hb_002236_020 0.1214291838 - - PREDICTED: nephrocystin-3 [Jatropha curcas]
13 Hb_009510_050 0.1284769694 - - conserved hypothetical protein [Ricinus communis]
14 Hb_024357_010 0.1287186 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
15 Hb_000431_030 0.1329994441 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
16 Hb_000252_190 0.1342472143 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
17 Hb_000000_070 0.1355383573 - - allene oxide synthase [Hevea brasiliensis]
18 Hb_005147_020 0.1355424663 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
19 Hb_000521_210 0.1361570013 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
20 Hb_003371_260 0.136960834 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]

Gene co-expression network

sample Hb_002239_030 Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002239_030--Hb_000101_140 Hb_000723_060 Hb_000723_060 Hb_002239_030--Hb_000723_060 Hb_002248_090 Hb_002248_090 Hb_002239_030--Hb_002248_090 Hb_024857_010 Hb_024857_010 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_000101_140--Hb_000656_370 Hb_000101_140--Hb_000723_060 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_000723_060--Hb_006615_180 Hb_003602_090 Hb_003602_090 Hb_000723_060--Hb_003602_090 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000723_060--Hb_000656_370 Hb_002248_090--Hb_000101_140 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060 Hb_002236_020 Hb_002236_020 Hb_024857_010--Hb_002236_020 Hb_087468_010 Hb_087468_010 Hb_024857_010--Hb_087468_010 Hb_024857_010--Hb_000656_370 Hb_000252_190 Hb_000252_190 Hb_024857_010--Hb_000252_190 Hb_024857_010--Hb_000101_140 Hb_000656_370--Hb_002968_010 Hb_000656_370--Hb_002236_020 Hb_145139_010 Hb_145139_010 Hb_000656_370--Hb_145139_010 Hb_004122_020 Hb_004122_020 Hb_000656_370--Hb_004122_020 Hb_060237_010--Hb_000101_140 Hb_060237_010--Hb_000656_370 Hb_060237_010--Hb_006615_180 Hb_060237_010--Hb_000723_060 Hb_060237_010--Hb_002968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259446 69.6249 7.02928 32.0678 0.67214 0.436151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.256592 0.212549 0.366329 14.1153 4.69925

CAGE analysis