Hb_002239_040

Information

Type -
Description -
Location Contig2239: 56977-59514
Sequence    

Annotation

kegg
ID tcc:TCM_005128
description Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1
nr
ID XP_007051524.1
description Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
swissprot
ID Q9ZPY7
description Exportin-2 OS=Arabidopsis thaliana GN=CAS PE=2 SV=1
trembl
ID A0A061DTJ9
description Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 OS=Theobroma cacao GN=TCM_005128 PE=4 SV=1
Gene Ontology
ID GO:0044424
description exportin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23277: 56941-57447 , PASA_asmbl_23278: 58424-58939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_040 0.0 - - Cellular apoptosis susceptibility protein / importin-alpha re-exporter, putative isoform 1 [Theobroma cacao]
2 Hb_000406_040 0.152219038 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
3 Hb_003656_110 0.1539676563 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
4 Hb_003097_190 0.1559550133 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
5 Hb_002311_250 0.1611220352 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
6 Hb_006816_170 0.1637702384 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
7 Hb_000152_560 0.1660041879 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
8 Hb_000179_140 0.1664573081 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
9 Hb_011344_010 0.1702816356 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
10 Hb_002431_020 0.1706386049 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
11 Hb_106321_030 0.1712426094 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
12 Hb_008725_150 0.1760306938 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
13 Hb_048476_170 0.1764236649 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
14 Hb_165350_010 0.1778608811 - - unnamed protein product [Triticum aestivum]
15 Hb_001247_200 0.1789707826 - - PREDICTED: clathrin coat assembly protein AP180 [Jatropha curcas]
16 Hb_004221_050 0.1834024114 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
17 Hb_000755_080 0.1851962058 - - hypothetical protein RCOM_1016710 [Ricinus communis]
18 Hb_000270_780 0.1866740708 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
19 Hb_011457_160 0.1868814191 - - PREDICTED: BI1-like protein [Jatropha curcas]
20 Hb_002701_080 0.1880873121 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]

Gene co-expression network

sample Hb_002239_040 Hb_002239_040 Hb_000406_040 Hb_000406_040 Hb_002239_040--Hb_000406_040 Hb_003656_110 Hb_003656_110 Hb_002239_040--Hb_003656_110 Hb_003097_190 Hb_003097_190 Hb_002239_040--Hb_003097_190 Hb_002311_250 Hb_002311_250 Hb_002239_040--Hb_002311_250 Hb_006816_170 Hb_006816_170 Hb_002239_040--Hb_006816_170 Hb_000152_560 Hb_000152_560 Hb_002239_040--Hb_000152_560 Hb_001083_030 Hb_001083_030 Hb_000406_040--Hb_001083_030 Hb_012132_030 Hb_012132_030 Hb_000406_040--Hb_012132_030 Hb_165350_010 Hb_165350_010 Hb_000406_040--Hb_165350_010 Hb_000487_100 Hb_000487_100 Hb_000406_040--Hb_000487_100 Hb_017168_010 Hb_017168_010 Hb_000406_040--Hb_017168_010 Hb_000406_040--Hb_003097_190 Hb_032202_170 Hb_032202_170 Hb_003656_110--Hb_032202_170 Hb_000028_040 Hb_000028_040 Hb_003656_110--Hb_000028_040 Hb_003656_110--Hb_003097_190 Hb_004512_020 Hb_004512_020 Hb_003656_110--Hb_004512_020 Hb_011457_160 Hb_011457_160 Hb_003656_110--Hb_011457_160 Hb_002890_180 Hb_002890_180 Hb_003656_110--Hb_002890_180 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_002311_250--Hb_011457_160 Hb_001946_360 Hb_001946_360 Hb_002311_250--Hb_001946_360 Hb_011344_010 Hb_011344_010 Hb_002311_250--Hb_011344_010 Hb_002374_440 Hb_002374_440 Hb_002311_250--Hb_002374_440 Hb_009680_030 Hb_009680_030 Hb_002311_250--Hb_009680_030 Hb_001247_200 Hb_001247_200 Hb_006816_170--Hb_001247_200 Hb_002489_010 Hb_002489_010 Hb_006816_170--Hb_002489_010 Hb_034299_040 Hb_034299_040 Hb_006816_170--Hb_034299_040 Hb_000384_030 Hb_000384_030 Hb_006816_170--Hb_000384_030 Hb_002233_090 Hb_002233_090 Hb_006816_170--Hb_002233_090 Hb_000614_080 Hb_000614_080 Hb_000152_560--Hb_000614_080 Hb_000152_890 Hb_000152_890 Hb_000152_560--Hb_000152_890 Hb_000152_560--Hb_010068_030 Hb_029866_130 Hb_029866_130 Hb_000152_560--Hb_029866_130 Hb_000152_560--Hb_001057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4055 5.4036 1.42848 2.89003 18.3973 5.35272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09392 3.20052 8.21595 5.01259 0.552573

CAGE analysis