Hb_002239_050

Information

Type -
Description -
Location Contig2239: 60697-66098
Sequence    

Annotation

kegg
ID rcu:RCOM_1400460
description acyl-CoA dehydrogenase, putative (EC:1.3.99.10)
nr
ID XP_012064856.1
description PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
swissprot
ID Q9FS88
description 2-methylacyl-CoA dehydrogenase, mitochondrial OS=Solanum tuberosum GN=2MBCD PE=1 SV=2
trembl
ID A0A067LA30
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05560 PE=3 SV=1
Gene Ontology
ID GO:0005759
description isovaleryl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23279: 60692-65810 , PASA_asmbl_23280: 63964-64197 , PASA_asmbl_23281: 65977-66101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002239_050 0.0 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]
2 Hb_000847_060 0.084465665 - - hypothetical protein [Jatropha curcas]
3 Hb_000419_020 0.0901773712 - - PREDICTED: aminodeoxychorismate synthase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000155_160 0.0923985434 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
5 Hb_002631_180 0.0925460205 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
6 Hb_163256_020 0.0940299891 - - fructokinase [Manihot esculenta]
7 Hb_000465_070 0.0999227016 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
8 Hb_001728_040 0.1002877025 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
9 Hb_002045_070 0.1004501378 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
10 Hb_003376_180 0.1014451432 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
11 Hb_000009_290 0.1041977414 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
12 Hb_002060_010 0.1065635507 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
13 Hb_002995_050 0.1068637748 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
14 Hb_005843_140 0.1079638553 - - Red chlorophyll catabolite reductase, chloroplast precursor, putative [Ricinus communis]
15 Hb_000136_350 0.10800106 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
16 Hb_006256_030 0.1083423741 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
17 Hb_002232_060 0.1093118624 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_000161_130 0.1097832535 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
19 Hb_006153_060 0.1112284459 - - catalytic, putative [Ricinus communis]
20 Hb_002677_020 0.111496342 - - PREDICTED: uncharacterized protein LOC105642265 [Jatropha curcas]

Gene co-expression network

sample Hb_002239_050 Hb_002239_050 Hb_000847_060 Hb_000847_060 Hb_002239_050--Hb_000847_060 Hb_000419_020 Hb_000419_020 Hb_002239_050--Hb_000419_020 Hb_000155_160 Hb_000155_160 Hb_002239_050--Hb_000155_160 Hb_002631_180 Hb_002631_180 Hb_002239_050--Hb_002631_180 Hb_163256_020 Hb_163256_020 Hb_002239_050--Hb_163256_020 Hb_000465_070 Hb_000465_070 Hb_002239_050--Hb_000465_070 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_000847_060--Hb_000155_160 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_000161_130 Hb_000161_130 Hb_000847_060--Hb_000161_130 Hb_007747_050 Hb_007747_050 Hb_000419_020--Hb_007747_050 Hb_000136_260 Hb_000136_260 Hb_000419_020--Hb_000136_260 Hb_000419_020--Hb_000155_160 Hb_002811_170 Hb_002811_170 Hb_000419_020--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_000419_020--Hb_000946_090 Hb_004586_420 Hb_004586_420 Hb_000419_020--Hb_004586_420 Hb_000085_350 Hb_000085_350 Hb_000155_160--Hb_000085_350 Hb_000155_160--Hb_007747_050 Hb_001863_430 Hb_001863_430 Hb_000155_160--Hb_001863_430 Hb_000327_230 Hb_000327_230 Hb_000155_160--Hb_000327_230 Hb_000922_040 Hb_000922_040 Hb_002631_180--Hb_000922_040 Hb_002016_080 Hb_002016_080 Hb_002631_180--Hb_002016_080 Hb_000136_350 Hb_000136_350 Hb_002631_180--Hb_000136_350 Hb_002631_180--Hb_163256_020 Hb_003994_260 Hb_003994_260 Hb_002631_180--Hb_003994_260 Hb_004324_090 Hb_004324_090 Hb_163256_020--Hb_004324_090 Hb_000465_300 Hb_000465_300 Hb_163256_020--Hb_000465_300 Hb_006256_030 Hb_006256_030 Hb_163256_020--Hb_006256_030 Hb_158445_010 Hb_158445_010 Hb_163256_020--Hb_158445_010 Hb_022318_020 Hb_022318_020 Hb_163256_020--Hb_022318_020 Hb_000310_020 Hb_000310_020 Hb_163256_020--Hb_000310_020 Hb_000035_480 Hb_000035_480 Hb_000465_070--Hb_000035_480 Hb_000457_290 Hb_000457_290 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_100886_010 Hb_100886_010 Hb_000465_070--Hb_100886_010 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92801 12.6442 11.0517 20.9691 4.58788 5.70689
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4762 34.8918 12.9893 14.4755 16.4652

CAGE analysis