Hb_002245_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2245: 108025-111290
Sequence    

Annotation

kegg
ID rcu:RCOM_0181650
description DNA binding protein, putative
nr
ID XP_002522828.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FH37
description Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1
trembl
ID B9SA09
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0181650 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor ilr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23343: 108089-111275
cDNA
(Sanger)
(ID:Location)		 003_E16.ab1: 108252-111288 , 004_A13.ab1: 108158-111201 , 005_O16.ab1: 108244-111275

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002245_030 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_014720_120 0.0676994692 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
3 Hb_000220_010 0.0764965252 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
4 Hb_000796_210 0.0788852596 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005730_120 0.080920043 - - PREDICTED: protein WHI4 [Jatropha curcas]
6 Hb_002601_110 0.0809601932 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
7 Hb_007423_040 0.0847132591 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
8 Hb_003387_060 0.0859151102 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002311_180 0.0864816 - - drought-responsive family protein [Populus trichocarpa]
10 Hb_003428_030 0.0878846258 - - tRNA, putative [Ricinus communis]
11 Hb_000032_270 0.089638292 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
12 Hb_000220_040 0.0904563806 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005271_220 0.0904705891 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
14 Hb_002205_110 0.0909333442 - - conserved hypothetical protein [Ricinus communis]
15 Hb_024071_020 0.0911996561 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
16 Hb_001357_150 0.0925760927 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
17 Hb_006059_050 0.0932000942 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
18 Hb_156635_010 0.0942713898 - - PREDICTED: autophagy-related protein 8f [Jatropha curcas]
19 Hb_005731_050 0.0946355277 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
20 Hb_001454_400 0.0947701762 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_002245_030 Hb_002245_030 Hb_014720_120 Hb_014720_120 Hb_002245_030--Hb_014720_120 Hb_000220_010 Hb_000220_010 Hb_002245_030--Hb_000220_010 Hb_000796_210 Hb_000796_210 Hb_002245_030--Hb_000796_210 Hb_005730_120 Hb_005730_120 Hb_002245_030--Hb_005730_120 Hb_002601_110 Hb_002601_110 Hb_002245_030--Hb_002601_110 Hb_007423_040 Hb_007423_040 Hb_002245_030--Hb_007423_040 Hb_014720_120--Hb_000220_010 Hb_120410_010 Hb_120410_010 Hb_014720_120--Hb_120410_010 Hb_000086_170 Hb_000086_170 Hb_014720_120--Hb_000086_170 Hb_010381_090 Hb_010381_090 Hb_014720_120--Hb_010381_090 Hb_007878_010 Hb_007878_010 Hb_014720_120--Hb_007878_010 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_007451_010 Hb_007451_010 Hb_000220_010--Hb_007451_010 Hb_000220_010--Hb_010381_090 Hb_000220_010--Hb_120410_010 Hb_002740_030 Hb_002740_030 Hb_000220_010--Hb_002740_030 Hb_003428_030 Hb_003428_030 Hb_000796_210--Hb_003428_030 Hb_112798_020 Hb_112798_020 Hb_000796_210--Hb_112798_020 Hb_000032_270 Hb_000032_270 Hb_000796_210--Hb_000032_270 Hb_000610_050 Hb_000610_050 Hb_000796_210--Hb_000610_050 Hb_007576_080 Hb_007576_080 Hb_000796_210--Hb_007576_080 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_001599_040 Hb_001599_040 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_004108_070 Hb_004108_070 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_007423_040--Hb_005730_120 Hb_007423_040--Hb_007576_080 Hb_002192_010 Hb_002192_010 Hb_007423_040--Hb_002192_010 Hb_000152_500 Hb_000152_500 Hb_007423_040--Hb_000152_500 Hb_027472_040 Hb_027472_040 Hb_007423_040--Hb_027472_040 Hb_001534_120 Hb_001534_120 Hb_007423_040--Hb_001534_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.4285 60.1659 61.2409 77.4184 68.9382 60.126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.107 95.0588 43.2655 38.2144 30.4921

CAGE analysis