Hb_002246_030

Information

Type -
Description -
Location Contig2246: 60841-62319
Sequence    

Annotation

kegg
ID pmum:103335864
description uncharacterized LOC103335864
nr
ID XP_012085983.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067JTY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22474 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002246_030 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_102179_010 0.0631169565 - - protein binding protein, putative [Ricinus communis]
3 Hb_005694_160 0.0687412697 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001047_210 0.0711190596 - - PSI reaction center subunit II [Citrus sinensis]
5 Hb_000500_240 0.0813080341 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004835_020 0.0815875892 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
7 Hb_026549_060 0.0839172176 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_000520_040 0.0865017034 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
9 Hb_005532_030 0.0871505713 - - DNA binding protein, putative [Ricinus communis]
10 Hb_000329_440 0.0872248487 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
11 Hb_002182_010 0.0874641581 - - PREDICTED: glucan endo-1,3-beta-glucosidase-like [Jatropha curcas]
12 Hb_001210_060 0.0890611893 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
13 Hb_000083_210 0.0891280056 - - Major facilitator superfamily protein, putative [Theobroma cacao]
14 Hb_000958_090 0.0935207662 - - PREDICTED: cation/H(+) antiporter 28 [Jatropha curcas]
15 Hb_000847_030 0.0970013435 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
16 Hb_001541_200 0.0978775816 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
17 Hb_000031_180 0.0987567604 - - sarcosine oxidase, putative [Ricinus communis]
18 Hb_000002_500 0.1004347987 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
19 Hb_005694_120 0.101148311 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
20 Hb_005569_010 0.1011848848 - - Heme-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002246_030 Hb_002246_030 Hb_102179_010 Hb_102179_010 Hb_002246_030--Hb_102179_010 Hb_005694_160 Hb_005694_160 Hb_002246_030--Hb_005694_160 Hb_001047_210 Hb_001047_210 Hb_002246_030--Hb_001047_210 Hb_000500_240 Hb_000500_240 Hb_002246_030--Hb_000500_240 Hb_004835_020 Hb_004835_020 Hb_002246_030--Hb_004835_020 Hb_026549_060 Hb_026549_060 Hb_002246_030--Hb_026549_060 Hb_102179_010--Hb_004835_020 Hb_002182_010 Hb_002182_010 Hb_102179_010--Hb_002182_010 Hb_102179_010--Hb_000500_240 Hb_102179_010--Hb_001047_210 Hb_000520_040 Hb_000520_040 Hb_102179_010--Hb_000520_040 Hb_005694_160--Hb_000500_240 Hb_005694_160--Hb_000520_040 Hb_000329_440 Hb_000329_440 Hb_005694_160--Hb_000329_440 Hb_005694_160--Hb_102179_010 Hb_015561_010 Hb_015561_010 Hb_005694_160--Hb_015561_010 Hb_001047_210--Hb_000520_040 Hb_000958_090 Hb_000958_090 Hb_001047_210--Hb_000958_090 Hb_008847_050 Hb_008847_050 Hb_001047_210--Hb_008847_050 Hb_001047_210--Hb_000500_240 Hb_000500_240--Hb_000520_040 Hb_000500_240--Hb_000329_440 Hb_000329_780 Hb_000329_780 Hb_000500_240--Hb_000329_780 Hb_005569_010 Hb_005569_010 Hb_004835_020--Hb_005569_010 Hb_004835_020--Hb_000329_440 Hb_004835_020--Hb_000958_090 Hb_004835_020--Hb_000520_040 Hb_004835_020--Hb_001047_210 Hb_001433_090 Hb_001433_090 Hb_026549_060--Hb_001433_090 Hb_001541_200 Hb_001541_200 Hb_026549_060--Hb_001541_200 Hb_026549_060--Hb_000958_090 Hb_020956_030 Hb_020956_030 Hb_026549_060--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_026549_060--Hb_005183_050 Hb_005010_030 Hb_005010_030 Hb_026549_060--Hb_005010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0312534 0.588828 2.0537 2.77696 0.0270054 0.0279853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.024971 0 0.129602 4.17677

CAGE analysis