Hb_002248_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig2248: 22149-23460
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14950g
description POPTRDRAFT_757719; hypothetical protein
nr
ID XP_011026747.1
description PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
swissprot
ID Q9SK55
description Transcription factor JUNGBRUNNEN 1 OS=Arabidopsis thaliana GN=JUB1 PE=1 SV=1
trembl
ID B9GY54
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14950g PE=4 SV=2
Gene Ontology
ID GO:0006807
description transcription factor jungbrunnen 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23353: 22152-23455
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_020 0.0 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
2 Hb_029571_010 0.0537124962 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
3 Hb_004774_060 0.1012354776 - - -
4 Hb_001279_220 0.1050523678 - - protein binding protein, putative [Ricinus communis]
5 Hb_001936_030 0.1065131773 - - PREDICTED: polygalacturonase At1g48100 isoform X1 [Jatropha curcas]
6 Hb_004055_180 0.110691443 - - cell wall invertase [Manihot esculenta]
7 Hb_002218_040 0.1172748219 - - conserved hypothetical protein [Ricinus communis]
8 Hb_097908_010 0.1200499729 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
9 Hb_000659_010 0.1258001934 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
10 Hb_175968_010 0.1374509399 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
11 Hb_000917_330 0.1396650539 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
12 Hb_033363_080 0.1418925653 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
13 Hb_001464_010 0.1421654573 - - PREDICTED: putative receptor-like protein kinase At4g00960 isoform X1 [Populus euphratica]
14 Hb_000567_300 0.1437161461 - - PREDICTED: protein YLS9-like [Jatropha curcas]
15 Hb_148435_010 0.144219993 - - glutathione s-transferase, putative [Ricinus communis]
16 Hb_004881_080 0.1454230403 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
17 Hb_000487_150 0.1463874518 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
18 Hb_012239_080 0.1486391357 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
19 Hb_035583_010 0.1489600091 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
20 Hb_000075_030 0.1493174091 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_002248_020 Hb_002248_020 Hb_029571_010 Hb_029571_010 Hb_002248_020--Hb_029571_010 Hb_004774_060 Hb_004774_060 Hb_002248_020--Hb_004774_060 Hb_001279_220 Hb_001279_220 Hb_002248_020--Hb_001279_220 Hb_001936_030 Hb_001936_030 Hb_002248_020--Hb_001936_030 Hb_004055_180 Hb_004055_180 Hb_002248_020--Hb_004055_180 Hb_002218_040 Hb_002218_040 Hb_002248_020--Hb_002218_040 Hb_029571_010--Hb_004055_180 Hb_029571_010--Hb_004774_060 Hb_029571_010--Hb_001279_220 Hb_001464_010 Hb_001464_010 Hb_029571_010--Hb_001464_010 Hb_097908_010 Hb_097908_010 Hb_029571_010--Hb_097908_010 Hb_175968_010 Hb_175968_010 Hb_004774_060--Hb_175968_010 Hb_004774_060--Hb_001279_220 Hb_004774_060--Hb_004055_180 Hb_033363_080 Hb_033363_080 Hb_004774_060--Hb_033363_080 Hb_004774_060--Hb_097908_010 Hb_000659_010 Hb_000659_010 Hb_004774_060--Hb_000659_010 Hb_001279_220--Hb_175968_010 Hb_001454_300 Hb_001454_300 Hb_001279_220--Hb_001454_300 Hb_001369_320 Hb_001369_320 Hb_001279_220--Hb_001369_320 Hb_001279_220--Hb_000659_010 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080 Hb_000917_330 Hb_000917_330 Hb_001936_030--Hb_000917_330 Hb_000625_130 Hb_000625_130 Hb_001936_030--Hb_000625_130 Hb_025469_040 Hb_025469_040 Hb_001936_030--Hb_025469_040 Hb_007044_070 Hb_007044_070 Hb_001936_030--Hb_007044_070 Hb_001936_030--Hb_004774_060 Hb_004055_180--Hb_097908_010 Hb_004055_180--Hb_001464_010 Hb_000563_610 Hb_000563_610 Hb_004055_180--Hb_000563_610 Hb_004055_180--Hb_175968_010 Hb_007417_020 Hb_007417_020 Hb_004055_180--Hb_007417_020 Hb_004881_080 Hb_004881_080 Hb_002218_040--Hb_004881_080 Hb_000075_030 Hb_000075_030 Hb_002218_040--Hb_000075_030 Hb_001005_210 Hb_001005_210 Hb_002218_040--Hb_001005_210 Hb_032631_080 Hb_032631_080 Hb_002218_040--Hb_032631_080 Hb_000061_360 Hb_000061_360 Hb_002218_040--Hb_000061_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0601209 1.64878 0.527794 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.6493 0.704107

CAGE analysis