Hb_002248_050

Information

Type -
Description -
Location Contig2248: 42364-48267
Sequence    

Annotation

kegg
ID rcu:RCOM_0814110
description hypothetical protein
nr
ID XP_012074167.1
description PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
swissprot
ID B6SFA4
description Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1
trembl
ID A0A067KMV1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09523 PE=4 SV=1
Gene Ontology
ID GO:0005524
description PREDICTED: uncharacterized protein LOC105635697

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23355: 42461-43444 , PASA_asmbl_23357: 47656-48586 , PASA_asmbl_23358: 44325-48107 , PASA_asmbl_23359: 43928-44531
cDNA
(Sanger)
(ID:Location)		 001_J21.ab1: 47956-48485 , 003_H23.ab1: 47956-48485 , 007_C04.ab1: 47971-48588 , 017_J03.ab1: 47957-48589 , 020_F10.ab1: 47968-48588 , 031_G20.ab1: 48057-48589 , 034_P13.ab1: 47956-48586 , 036_L07.ab1: 47956-48350 , 037_E24.ab1: 47960-48586 , 050_A17.ab1: 48053-48586 , 051_P16.ab1: 47956-48586

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_050 0.0 - - PREDICTED: uncharacterized protein LOC105635697 [Jatropha curcas]
2 Hb_103873_010 0.0914754357 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
3 Hb_002301_320 0.1109849875 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
4 Hb_000421_190 0.1153500078 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002835_170 0.1356744838 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
6 Hb_006787_040 0.1402858671 - - polyadenylate-binding protein, putative [Ricinus communis]
7 Hb_000329_600 0.1428407466 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
8 Hb_003497_030 0.1448542158 - - ADP-ribosylation factor, putative [Ricinus communis]
9 Hb_134789_010 0.1456044488 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
10 Hb_029223_030 0.1465155258 - - hypothetical protein POPTR_0006s12500g [Populus trichocarpa]
11 Hb_000571_070 0.1485837073 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
12 Hb_000849_040 0.1490291207 - - transcription factor, putative [Ricinus communis]
13 Hb_001488_100 0.1499260766 - - -
14 Hb_002038_060 0.1507445407 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
15 Hb_116349_150 0.154301374 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
16 Hb_000300_010 0.1572252841 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_001606_070 0.1573432763 - - fimbrin, putative [Ricinus communis]
18 Hb_005000_290 0.1583264974 transcription factor TF Family: HSF hypothetical protein JCGZ_07430 [Jatropha curcas]
19 Hb_001396_230 0.1587344921 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
20 Hb_002687_050 0.161248353 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_002248_050 Hb_002248_050 Hb_103873_010 Hb_103873_010 Hb_002248_050--Hb_103873_010 Hb_002301_320 Hb_002301_320 Hb_002248_050--Hb_002301_320 Hb_000421_190 Hb_000421_190 Hb_002248_050--Hb_000421_190 Hb_002835_170 Hb_002835_170 Hb_002248_050--Hb_002835_170 Hb_006787_040 Hb_006787_040 Hb_002248_050--Hb_006787_040 Hb_000329_600 Hb_000329_600 Hb_002248_050--Hb_000329_600 Hb_002038_060 Hb_002038_060 Hb_103873_010--Hb_002038_060 Hb_103873_010--Hb_002301_320 Hb_014067_010 Hb_014067_010 Hb_103873_010--Hb_014067_010 Hb_001999_060 Hb_001999_060 Hb_103873_010--Hb_001999_060 Hb_026048_100 Hb_026048_100 Hb_103873_010--Hb_026048_100 Hb_001488_100 Hb_001488_100 Hb_002301_320--Hb_001488_100 Hb_002301_320--Hb_002835_170 Hb_000571_070 Hb_000571_070 Hb_002301_320--Hb_000571_070 Hb_003001_030 Hb_003001_030 Hb_002301_320--Hb_003001_030 Hb_000567_250 Hb_000567_250 Hb_000421_190--Hb_000567_250 Hb_000421_190--Hb_002301_320 Hb_000421_190--Hb_103873_010 Hb_000421_190--Hb_000329_600 Hb_009680_050 Hb_009680_050 Hb_000421_190--Hb_009680_050 Hb_011457_100 Hb_011457_100 Hb_002835_170--Hb_011457_100 Hb_001478_050 Hb_001478_050 Hb_002835_170--Hb_001478_050 Hb_001102_010 Hb_001102_010 Hb_002835_170--Hb_001102_010 Hb_116349_150 Hb_116349_150 Hb_002835_170--Hb_116349_150 Hb_001606_070 Hb_001606_070 Hb_002835_170--Hb_001606_070 Hb_000849_040 Hb_000849_040 Hb_006787_040--Hb_000849_040 Hb_000442_030 Hb_000442_030 Hb_006787_040--Hb_000442_030 Hb_000193_230 Hb_000193_230 Hb_006787_040--Hb_000193_230 Hb_000387_080 Hb_000387_080 Hb_006787_040--Hb_000387_080 Hb_001366_220 Hb_001366_220 Hb_006787_040--Hb_001366_220 Hb_001191_100 Hb_001191_100 Hb_006787_040--Hb_001191_100 Hb_005000_290 Hb_005000_290 Hb_000329_600--Hb_005000_290 Hb_015934_020 Hb_015934_020 Hb_000329_600--Hb_015934_020 Hb_001396_220 Hb_001396_220 Hb_000329_600--Hb_001396_220 Hb_004453_140 Hb_004453_140 Hb_000329_600--Hb_004453_140 Hb_000427_110 Hb_000427_110 Hb_000329_600--Hb_000427_110 Hb_002374_460 Hb_002374_460 Hb_000329_600--Hb_002374_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0285 1.84506 0.254056 0.990769 28.6376 76.2026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.0101 58.765 75.388 5.04138 3.34753

CAGE analysis