Hb_002248_090

Information

Type -
Description -
Location Contig2248: 93990-94925
Sequence    

Annotation

kegg
ID rcu:RCOM_0821630
description hypothetical protein
nr
ID ADR30789.1
description metallothionein 3-like protein [Hevea brasiliensis]
swissprot
ID Q96386
description Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1
trembl
ID I1SN86
description Metallothionein 3-like protein OS=Hevea brasiliensis GN=MT3L PE=2 SV=1
Gene Ontology
ID GO:0005622
description metallothionein-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23361: 94223-95094
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_090 0.0 - - metallothionein 3-like protein [Hevea brasiliensis]
2 Hb_002239_030 0.0941256421 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
3 Hb_000101_140 0.104840353 - - amino acid transporter, putative [Ricinus communis]
4 Hb_000521_210 0.1208742249 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_011928_030 0.1216312806 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
6 Hb_000431_030 0.1223443695 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
7 Hb_001073_060 0.1274958873 - - phosphate transporter 1 [Hevea brasiliensis]
8 Hb_005147_020 0.1290706844 - - PREDICTED: uncharacterized protein LOC105629671 [Jatropha curcas]
9 Hb_005380_030 0.1338946231 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase B120 isoform X2 [Jatropha curcas]
10 Hb_024857_010 0.1350208956 - - glutaredoxin 2.1 [Hevea brasiliensis]
11 Hb_017417_030 0.1350892653 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
12 Hb_060237_010 0.1359978985 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000723_060 0.1364829229 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
14 Hb_003602_090 0.1389135136 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
15 Hb_002968_010 0.139382197 - - PREDICTED: pectinesterase [Jatropha curcas]
16 Hb_006615_180 0.1401460319 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
17 Hb_005000_200 0.1436344432 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
18 Hb_000656_370 0.1453252665 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
19 Hb_009510_050 0.1478783442 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000431_180 0.1507786548 - - PREDICTED: peroxidase 55 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_090 Hb_002248_090 Hb_002239_030 Hb_002239_030 Hb_002248_090--Hb_002239_030 Hb_000101_140 Hb_000101_140 Hb_002248_090--Hb_000101_140 Hb_000521_210 Hb_000521_210 Hb_002248_090--Hb_000521_210 Hb_011928_030 Hb_011928_030 Hb_002248_090--Hb_011928_030 Hb_000431_030 Hb_000431_030 Hb_002248_090--Hb_000431_030 Hb_001073_060 Hb_001073_060 Hb_002248_090--Hb_001073_060 Hb_002239_030--Hb_000101_140 Hb_000723_060 Hb_000723_060 Hb_002239_030--Hb_000723_060 Hb_024857_010 Hb_024857_010 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_000101_140--Hb_000656_370 Hb_000101_140--Hb_000723_060 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000101_140--Hb_000521_210 Hb_084127_010 Hb_084127_010 Hb_000521_210--Hb_084127_010 Hb_000856_240 Hb_000856_240 Hb_000521_210--Hb_000856_240 Hb_000579_220 Hb_000579_220 Hb_000521_210--Hb_000579_220 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120 Hb_000347_370 Hb_000347_370 Hb_011928_030--Hb_000347_370 Hb_011928_030--Hb_024857_010 Hb_001691_190 Hb_001691_190 Hb_011928_030--Hb_001691_190 Hb_000270_010 Hb_000270_010 Hb_011928_030--Hb_000270_010 Hb_004267_070 Hb_004267_070 Hb_011928_030--Hb_004267_070 Hb_003371_260 Hb_003371_260 Hb_000431_030--Hb_003371_260 Hb_000431_030--Hb_002239_030 Hb_000431_030--Hb_024857_010 Hb_000431_030--Hb_000101_140 Hb_012760_060 Hb_012760_060 Hb_000431_030--Hb_012760_060 Hb_002219_090 Hb_002219_090 Hb_001073_060--Hb_002219_090 Hb_001073_060--Hb_000856_240 Hb_011791_010 Hb_011791_010 Hb_001073_060--Hb_011791_010 Hb_000676_030 Hb_000676_030 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_149056_010 Hb_149056_010 Hb_001073_060--Hb_149056_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.2064 4331.91 296.517 1605.34 56.0428 47.127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0103 11.8368 0.505418 1201.69 158.32

CAGE analysis