Hb_002248_120

Information

Type -
Description -
Location Contig2248: 149960-162456
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41040g
description hypothetical protein
nr
ID XP_012084963.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID F4I114
description Probable serine/threonine-protein kinase At1g09600 OS=Arabidopsis thaliana GN=At1g09600 PE=3 SV=1
trembl
ID A0A067K482
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20995 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23369: 149994-162562 , PASA_asmbl_23370: 156953-157275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_120 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_005885_030 0.0682093351 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_001911_010 0.0719626195 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
4 Hb_013405_180 0.0744274515 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
5 Hb_013358_060 0.0801545228 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
6 Hb_002387_040 0.0812860255 - - protein transporter, putative [Ricinus communis]
7 Hb_004696_070 0.0879540294 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
8 Hb_008686_020 0.0883667921 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
9 Hb_006794_020 0.0889733493 - - PREDICTED: uncharacterized protein LOC105645849 isoform X6 [Jatropha curcas]
10 Hb_000331_100 0.090691497 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
11 Hb_000008_280 0.0910227823 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
12 Hb_008165_020 0.09187121 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
13 Hb_172421_010 0.0921944665 - - cysteine protease [Hevea brasiliensis]
14 Hb_001951_100 0.0926381438 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
15 Hb_000418_050 0.0929849299 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
16 Hb_000421_110 0.0938647247 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
17 Hb_010775_010 0.0943470864 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
18 Hb_000815_310 0.0953231304 - - protein kinase, putative [Ricinus communis]
19 Hb_012490_010 0.0953951077 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_003540_250 0.0969510141 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002248_120 Hb_002248_120 Hb_005885_030 Hb_005885_030 Hb_002248_120--Hb_005885_030 Hb_001911_010 Hb_001911_010 Hb_002248_120--Hb_001911_010 Hb_013405_180 Hb_013405_180 Hb_002248_120--Hb_013405_180 Hb_013358_060 Hb_013358_060 Hb_002248_120--Hb_013358_060 Hb_002387_040 Hb_002387_040 Hb_002248_120--Hb_002387_040 Hb_004696_070 Hb_004696_070 Hb_002248_120--Hb_004696_070 Hb_010775_010 Hb_010775_010 Hb_005885_030--Hb_010775_010 Hb_002686_410 Hb_002686_410 Hb_005885_030--Hb_002686_410 Hb_000270_700 Hb_000270_700 Hb_005885_030--Hb_000270_700 Hb_006794_020 Hb_006794_020 Hb_005885_030--Hb_006794_020 Hb_001133_090 Hb_001133_090 Hb_005885_030--Hb_001133_090 Hb_159295_010 Hb_159295_010 Hb_001911_010--Hb_159295_010 Hb_007031_040 Hb_007031_040 Hb_001911_010--Hb_007031_040 Hb_001410_130 Hb_001410_130 Hb_001911_010--Hb_001410_130 Hb_000421_110 Hb_000421_110 Hb_001911_010--Hb_000421_110 Hb_005403_010 Hb_005403_010 Hb_001911_010--Hb_005403_010 Hb_000008_280 Hb_000008_280 Hb_013405_180--Hb_000008_280 Hb_000170_160 Hb_000170_160 Hb_013405_180--Hb_000170_160 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_001998_210 Hb_001998_210 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_003725_010 Hb_003725_010 Hb_013358_060--Hb_003725_010 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000699_210 Hb_000699_210 Hb_002387_040--Hb_000699_210 Hb_024714_070 Hb_024714_070 Hb_002387_040--Hb_024714_070 Hb_000418_050 Hb_000418_050 Hb_002387_040--Hb_000418_050 Hb_005288_050 Hb_005288_050 Hb_002387_040--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_002387_040--Hb_002804_010 Hb_012490_010 Hb_012490_010 Hb_004696_070--Hb_012490_010 Hb_008686_020 Hb_008686_020 Hb_004696_070--Hb_008686_020 Hb_002686_140 Hb_002686_140 Hb_004696_070--Hb_002686_140 Hb_020805_150 Hb_020805_150 Hb_004696_070--Hb_020805_150 Hb_004696_070--Hb_001951_100 Hb_004696_070--Hb_000331_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.61632 32.9618 18.8286 17.875 6.44993 7.27506
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.53634 4.30318 5.45125 11.0585 18.9788

CAGE analysis