Hb_002248_130

Information

Type -
Description -
Location Contig2248: 179072-185925
Sequence    

Annotation

kegg
ID rcu:RCOM_0073590
description ubiquitin ligase protein cop1, putative (EC:1.3.1.74)
nr
ID XP_002533551.1
description ubiquitin ligase protein cop1, putative [Ricinus communis]
swissprot
ID Q9LJR3
description Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1
trembl
ID B9T5N2
description Ubiquitin ligase protein cop1, putative OS=Ricinus communis GN=RCOM_0073590 PE=4 SV=1
Gene Ontology
ID GO:0004672
description protein spa1-related 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23371: 179414-185826 , PASA_asmbl_23372: 179414-185826 , PASA_asmbl_23373: 183148-183663 , PASA_asmbl_23374: 179414-184319 , PASA_asmbl_23375: 179414-184319 , PASA_asmbl_23377: 182281-182826 , PASA_asmbl_23378: 184347-184504
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_130 0.0 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
2 Hb_006615_030 0.075155209 - - prolyl oligopeptidase family protein [Populus trichocarpa]
3 Hb_003540_250 0.0815820816 - - PREDICTED: uncharacterized protein LOC105649465 isoform X2 [Jatropha curcas]
4 Hb_002811_040 0.086335434 - - 5'->3' exoribonuclease, putative [Ricinus communis]
5 Hb_005288_140 0.0886140179 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
6 Hb_000179_190 0.0931641867 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]
7 Hb_017214_040 0.0937639241 - - PREDICTED: E3 ubiquitin-protein ligase COP1 isoform X1 [Jatropha curcas]
8 Hb_000649_250 0.094597853 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
9 Hb_000205_130 0.0958475509 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_033152_090 0.0970846648 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
11 Hb_000866_450 0.0972595134 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
12 Hb_096819_010 0.0994827179 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
13 Hb_030545_030 0.1012202131 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
14 Hb_000603_190 0.1014651497 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
15 Hb_000640_190 0.1019621585 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
16 Hb_008387_010 0.1049606976 - - SMAD/FHA domain-containing protein isoform 3 [Theobroma cacao]
17 Hb_000048_080 0.1056727939 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
18 Hb_001396_070 0.1063165317 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002903_140 0.1065657545 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
20 Hb_003912_040 0.1066912802 - - hypothetical protein CISIN_1g005153mg [Citrus sinensis]

Gene co-expression network

sample Hb_002248_130 Hb_002248_130 Hb_006615_030 Hb_006615_030 Hb_002248_130--Hb_006615_030 Hb_003540_250 Hb_003540_250 Hb_002248_130--Hb_003540_250 Hb_002811_040 Hb_002811_040 Hb_002248_130--Hb_002811_040 Hb_005288_140 Hb_005288_140 Hb_002248_130--Hb_005288_140 Hb_000179_190 Hb_000179_190 Hb_002248_130--Hb_000179_190 Hb_017214_040 Hb_017214_040 Hb_002248_130--Hb_017214_040 Hb_003992_180 Hb_003992_180 Hb_006615_030--Hb_003992_180 Hb_003895_020 Hb_003895_020 Hb_006615_030--Hb_003895_020 Hb_006615_030--Hb_000179_190 Hb_001911_010 Hb_001911_010 Hb_006615_030--Hb_001911_010 Hb_001410_130 Hb_001410_130 Hb_006615_030--Hb_001410_130 Hb_000815_310 Hb_000815_310 Hb_003540_250--Hb_000815_310 Hb_005305_100 Hb_005305_100 Hb_003540_250--Hb_005305_100 Hb_033152_090 Hb_033152_090 Hb_003540_250--Hb_033152_090 Hb_000956_040 Hb_000956_040 Hb_003540_250--Hb_000956_040 Hb_003540_250--Hb_000179_190 Hb_000003_400 Hb_000003_400 Hb_002811_040--Hb_000003_400 Hb_000529_060 Hb_000529_060 Hb_002811_040--Hb_000529_060 Hb_000445_060 Hb_000445_060 Hb_002811_040--Hb_000445_060 Hb_008387_010 Hb_008387_010 Hb_002811_040--Hb_008387_010 Hb_023226_070 Hb_023226_070 Hb_002811_040--Hb_023226_070 Hb_004724_370 Hb_004724_370 Hb_002811_040--Hb_004724_370 Hb_004319_050 Hb_004319_050 Hb_005288_140--Hb_004319_050 Hb_000866_450 Hb_000866_450 Hb_005288_140--Hb_000866_450 Hb_026198_060 Hb_026198_060 Hb_005288_140--Hb_026198_060 Hb_000174_150 Hb_000174_150 Hb_005288_140--Hb_000174_150 Hb_005403_010 Hb_005403_010 Hb_005288_140--Hb_005403_010 Hb_005288_140--Hb_033152_090 Hb_000110_350 Hb_000110_350 Hb_000179_190--Hb_000110_350 Hb_000179_190--Hb_017214_040 Hb_000179_190--Hb_000445_060 Hb_003929_210 Hb_003929_210 Hb_000179_190--Hb_003929_210 Hb_000179_190--Hb_005305_100 Hb_170077_010 Hb_170077_010 Hb_000179_190--Hb_170077_010 Hb_017214_040--Hb_008387_010 Hb_017214_040--Hb_023226_070 Hb_017214_040--Hb_000445_060 Hb_000227_270 Hb_000227_270 Hb_017214_040--Hb_000227_270 Hb_017214_040--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5299 57.7332 43.1818 34.9818 17.3248 28.4818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6792 13.6953 8.99089 14.4707 26.5084

CAGE analysis