Hb_002249_050

Information

Type -
Description -
Location Contig2249: 36259-42025
Sequence    

Annotation

kegg
ID rcu:RCOM_1503930
description Auxin response factor, putative
nr
ID XP_002511100.1
description Auxin response factor, putative [Ricinus communis]
swissprot
ID Q94JM3
description Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2
trembl
ID B9RA75
description Auxin response factor OS=Ricinus communis GN=RCOM_1503930 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin response factor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23393: 36628-41965 , PASA_asmbl_23394: 37475-37588
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_050 0.0 - - Auxin response factor, putative [Ricinus communis]
2 Hb_159295_010 0.0812666215 - - hypothetical protein RCOM_1520720 [Ricinus communis]
3 Hb_005765_040 0.0878524444 - - transcription elongation factor s-II, putative [Ricinus communis]
4 Hb_002400_160 0.0915933725 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
5 Hb_002154_020 0.094841164 - - protein with unknown function [Ricinus communis]
6 Hb_000613_220 0.0974731022 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
7 Hb_001488_040 0.0996941461 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
8 Hb_002387_040 0.1002925387 - - protein transporter, putative [Ricinus communis]
9 Hb_009486_160 0.1112997122 - - PREDICTED: metacaspase-1 [Jatropha curcas]
10 Hb_004696_070 0.1132635065 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
11 Hb_012490_010 0.1141243828 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
12 Hb_007849_050 0.1154290792 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
13 Hb_002897_050 0.115659531 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
14 Hb_000699_210 0.1158281159 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
15 Hb_002918_320 0.1172226812 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
16 Hb_004551_020 0.1177970455 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
17 Hb_002477_120 0.1188049911 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
18 Hb_002482_030 0.1189007857 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
19 Hb_001410_130 0.1203105152 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
20 Hb_013358_060 0.120321674 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_050 Hb_002249_050 Hb_159295_010 Hb_159295_010 Hb_002249_050--Hb_159295_010 Hb_005765_040 Hb_005765_040 Hb_002249_050--Hb_005765_040 Hb_002400_160 Hb_002400_160 Hb_002249_050--Hb_002400_160 Hb_002154_020 Hb_002154_020 Hb_002249_050--Hb_002154_020 Hb_000613_220 Hb_000613_220 Hb_002249_050--Hb_000613_220 Hb_001488_040 Hb_001488_040 Hb_002249_050--Hb_001488_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_011249_060 Hb_011249_060 Hb_159295_010--Hb_011249_060 Hb_005765_040--Hb_011249_060 Hb_001341_160 Hb_001341_160 Hb_005765_040--Hb_001341_160 Hb_009302_030 Hb_009302_030 Hb_005765_040--Hb_009302_030 Hb_002918_320 Hb_002918_320 Hb_005765_040--Hb_002918_320 Hb_003604_050 Hb_003604_050 Hb_005765_040--Hb_003604_050 Hb_002400_160--Hb_002154_020 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_000613_220--Hb_159295_010 Hb_000613_220--Hb_002387_040 Hb_005288_050 Hb_005288_050 Hb_000613_220--Hb_005288_050 Hb_002804_010 Hb_002804_010 Hb_000613_220--Hb_002804_010 Hb_006794_020 Hb_006794_020 Hb_000613_220--Hb_006794_020 Hb_001862_110 Hb_001862_110 Hb_001488_040--Hb_001862_110 Hb_000699_210 Hb_000699_210 Hb_001488_040--Hb_000699_210 Hb_009486_160 Hb_009486_160 Hb_001488_040--Hb_009486_160 Hb_001427_150 Hb_001427_150 Hb_001488_040--Hb_001427_150 Hb_001488_040--Hb_011249_060 Hb_001488_040--Hb_005765_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.5553 148.281 62.5786 34.5077 26.8837 20.3545
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0457 21.0919 24.1781 54.4781 50.9653

CAGE analysis